Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   AL533_RS01350 Genome accession   NZ_CP014019
Coordinates   266059..266574 (-) Length   171 a.a.
NCBI ID   WP_016804645.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain FDAARGOS_129     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 261059..271574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL533_RS01325 (AL533_01325) - 261601..263244 (+) 1644 WP_083008277.1 nitrite/sulfite reductase -
  AL533_RS01330 (AL533_01330) - 263237..263722 (+) 486 WP_016804641.1 DUF934 domain-containing protein -
  AL533_RS01335 (AL533_01335) - 263800..264153 (+) 354 WP_016804642.1 DMT family transporter -
  AL533_RS01340 (AL533_01340) - 264206..264649 (-) 444 WP_104918615.1 VOC family protein -
  AL533_RS01345 (AL533_01345) - 264775..265950 (-) 1176 WP_004712038.1 thiolase family protein -
  AL533_RS01350 (AL533_01350) fimT 266059..266574 (-) 516 WP_016804645.1 GspH/FimT family pseudopilin Machinery gene
  AL533_RS01355 (AL533_01355) omp38 266954..267997 (+) 1044 WP_016804646.1 outer membrane protein Omp38 -
  AL533_RS19270 - 268125..268283 (-) 159 WP_004712046.1 hypothetical protein -
  AL533_RS01360 (AL533_01360) - 268287..269492 (-) 1206 WP_104918616.1 RtcB family protein -
  AL533_RS01365 (AL533_01365) - 269770..271230 (-) 1461 WP_104918617.1 amino acid permease -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19410.56 Da        Isoelectric Point: 8.5007

>NTDB_id=143922 AL533_RS01350 WP_016804645.1 266059..266574(-) (fimT) [Acinetobacter nosocomialis strain FDAARGOS_129]
MFRSPGFTIVELSITLVILVIMSVIAIPLYHQFMASVELKNTSRVLTIHIQKAKSDAIIQHKNIVLCPSSDQVICNTDWN
KHLISFVDSNRNLQHDLNEELLTSIDLNHTYGSMKLQRFGKKQNSIVFQGSSGLPIESNGSFIYCSYDQLKNFKLVLSKM
GHVRVEELKNC

Nucleotide


Download         Length: 516 bp        

>NTDB_id=143922 AL533_RS01350 WP_016804645.1 266059..266574(-) (fimT) [Acinetobacter nosocomialis strain FDAARGOS_129]
ATGTTTAGATCTCCTGGTTTTACTATAGTTGAGCTCTCTATAACCCTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAATTAAAAAATACCTCGCGTGTACTCACAATTCATATACAAAAAGCCA
AATCGGACGCAATTATTCAGCATAAGAACATTGTTCTGTGTCCAAGTTCAGATCAGGTAATCTGTAATACAGATTGGAAT
AAACACTTAATCAGCTTCGTAGATAGTAACCGCAATCTACAGCATGATTTAAATGAAGAATTATTAACCTCTATAGATCT
TAACCATACTTATGGTTCTATGAAATTACAACGTTTTGGTAAAAAACAAAATAGTATTGTTTTTCAAGGAAGCTCGGGAC
TTCCAATCGAGTCTAATGGTAGTTTTATTTACTGTTCTTATGATCAGCTTAAAAATTTTAAATTAGTTCTTAGCAAAATG
GGGCATGTGCGTGTCGAAGAATTAAAAAATTGTTAG

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(49-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Acinetobacter baylyi ADP1

43.976

97.076

0.427