Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   WV34_RS13225 Genome accession   NZ_CP011252
Coordinates   2613245..2613997 (-) Length   250 a.a.
NCBI ID   WP_088613207.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MT45     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2608245..2618997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WV34_RS13200 (WV34_12855) mreC 2608680..2609543 (-) 864 WP_013353061.1 rod shape-determining protein MreC -
  WV34_RS13205 (WV34_12860) mreB 2609574..2610587 (-) 1014 WP_013353062.1 cell shape-determining protein MreB -
  WV34_RS13210 (WV34_12865) radC 2610679..2611374 (-) 696 WP_013353063.1 DNA repair protein RadC -
  WV34_RS13215 (WV34_12870) - 2611406..2611975 (-) 570 WP_065522626.1 Maf family protein -
  WV34_RS13220 (WV34_12875) - 2612117..2613118 (-) 1002 WP_088613206.1 SPOR domain-containing protein -
  WV34_RS13225 (WV34_12880) comC 2613245..2613997 (-) 753 WP_088613207.1 A24 family peptidase Machinery gene
  WV34_RS13230 (WV34_12885) - 2614137..2615429 (-) 1293 WP_088613208.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  WV34_RS13235 (WV34_12890) - 2615488..2618130 (-) 2643 WP_088613209.1 valine--tRNA ligase -
  WV34_RS13240 (WV34_12895) - 2618581..2618772 (+) 192 WP_013353069.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 26897.56 Da        Isoelectric Point: 9.0703

>NTDB_id=143904 WV34_RS13225 WP_088613207.1 2613245..2613997(-) (comC) [Bacillus amyloliquefaciens strain MT45]
MLLILFLLGLIFGSFFYTAACRIPLRISVISPRSSCSFCGLPLSWGELVPVVSYVLQKGRCRNCRGKLSIMYPAAECWTA
CLFTAAGIHLGFSRELLVALLFLSLLMIVTVTDLQYMLIPDKVLLFFLPLLIVGRIFSPLDSWYAGFAGAVCGFFLLIFI
MFVSKGGIGAGDVKLFGVIGLVLGVKLVLIAFFLSVIFGAVYGMCAAAGGRLGKKQPFPFAPAIAAGSAVSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=143904 WV34_RS13225 WP_088613207.1 2613245..2613997(-) (comC) [Bacillus amyloliquefaciens strain MT45]
GTGCTTTTGATTCTGTTTTTGCTCGGTTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTTCGAAT
CTCGGTTATTTCGCCGCGCTCATCCTGTTCCTTTTGCGGCCTGCCGCTCTCCTGGGGTGAGCTGGTGCCCGTCGTTTCTT
ATGTCCTGCAAAAAGGGAGATGCAGAAACTGTCGTGGGAAGCTGTCGATTATGTATCCGGCGGCAGAATGCTGGACGGCA
TGTTTATTTACGGCTGCCGGTATTCATCTCGGTTTCTCAAGAGAACTGTTAGTGGCGCTTTTATTTCTGTCTCTATTAAT
GATTGTTACCGTGACAGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTGCCGCTTCTCATCGTCG
GCCGTATTTTTTCTCCGCTGGATTCATGGTATGCGGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTGATTTTTATT
ATGTTTGTCAGTAAAGGAGGCATCGGTGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTTGTGCTCGGCGTGAAGCT
CGTACTCATTGCATTCTTTCTTTCCGTTATATTCGGAGCCGTATACGGGATGTGCGCCGCAGCGGGCGGCAGGCTTGGAA
AAAAGCAGCCTTTCCCGTTTGCGCCCGCCATCGCGGCCGGGAGCGCTGTGAGTTATTTATACGGTGAAGAACTGTTTTCG
TTTTACATCAAACTCGCTTCCGGAGGAGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-89)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

59.274

99.2

0.588

Multiple sequence alignment