Detailed information
Bioinformatically predicted
Overview
| Name | comGB | Type | Machinery gene |
| Locus tag | WV34_RS12165 | Genome accession | NZ_CP011252 |
| Coordinates | 2418757..2419794 (-) | Length | 345 a.a. |
| NCBI ID | WP_088613117.1 | Uniprot ID | - |
| Organism | Bacillus amyloliquefaciens strain MT45 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2413757..2424794
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WV34_RS12115 (WV34_11830) | - | 2413990..2414775 (-) | 786 | WP_013352862.1 | TasA family protein | - |
| WV34_RS12120 (WV34_11835) | - | 2414840..2415424 (-) | 585 | WP_065522773.1 | signal peptidase I | - |
| WV34_RS12125 (WV34_11840) | tapA | 2415396..2416067 (-) | 672 | WP_088613114.1 | amyloid fiber anchoring/assembly protein TapA | - |
| WV34_RS12130 (WV34_11845) | - | 2416325..2416654 (+) | 330 | WP_045510605.1 | DUF3889 domain-containing protein | - |
| WV34_RS12135 (WV34_11850) | - | 2416695..2416874 (-) | 180 | WP_016938971.1 | YqzE family protein | - |
| WV34_RS12140 (WV34_11855) | comGG | 2416931..2417308 (-) | 378 | WP_088613115.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| WV34_RS12145 (WV34_11860) | comGF | 2417310..2417810 (-) | 501 | WP_235608361.1 | competence type IV pilus minor pilin ComGF | - |
| WV34_RS12150 (WV34_11865) | comGE | 2417719..2418033 (-) | 315 | WP_045510593.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| WV34_RS12155 (WV34_11870) | comGD | 2418017..2418454 (-) | 438 | WP_045510590.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| WV34_RS12160 (WV34_11875) | comGC | 2418444..2418710 (-) | 267 | WP_044051905.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| WV34_RS12165 (WV34_11880) | comGB | 2418757..2419794 (-) | 1038 | WP_088613117.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| WV34_RS12170 (WV34_11885) | comGA | 2419781..2420851 (-) | 1071 | WP_088613118.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| WV34_RS12175 (WV34_11890) | - | 2421045..2421995 (-) | 951 | WP_088613119.1 | magnesium transporter CorA family protein | - |
| WV34_RS12180 (WV34_11895) | - | 2422142..2423443 (+) | 1302 | WP_088613120.1 | hemolysin family protein | - |
| WV34_RS12185 (WV34_11900) | - | 2423481..2424311 (-) | 831 | WP_088613121.1 | STAS domain-containing protein | - |
Sequence
Protein
Download Length: 345 a.a. Molecular weight: 39672.97 Da Isoelectric Point: 9.5868
>NTDB_id=143895 WV34_RS12165 WP_088613117.1 2418757..2419794(-) (comGB) [Bacillus amyloliquefaciens strain MT45]
MKRIKRTWPLKDQAAFLKRLGEMTEKGYSLIEGLRLLKLQLHKRQLAELTDGIRRLREGDAFYQVLEALSFHKEAVSICY
FAEKHGELPGAMKQSGELLQRKLMQTNQIKKMLRYPMFLICSVFVMFYILQSLIIPQFSGIYQSMNMNTSGATAFIFAFF
QHFHEACALGMSAVLSLFLYVWFLCKKKSPQDKMLIVVKIPLIGKAAVLFNSYFFSLQLSSLLKSGLSIYDSLTAFKEQS
FLPFYREEAEMLITRLKAGETIESALSGHPCYEKDLAAAVSHGQANGRLHRELYTYSQFMMERLEQNAEKYTGILQPVIY
GVVAGMILLVYMSMLMPMYQMMNQM
MKRIKRTWPLKDQAAFLKRLGEMTEKGYSLIEGLRLLKLQLHKRQLAELTDGIRRLREGDAFYQVLEALSFHKEAVSICY
FAEKHGELPGAMKQSGELLQRKLMQTNQIKKMLRYPMFLICSVFVMFYILQSLIIPQFSGIYQSMNMNTSGATAFIFAFF
QHFHEACALGMSAVLSLFLYVWFLCKKKSPQDKMLIVVKIPLIGKAAVLFNSYFFSLQLSSLLKSGLSIYDSLTAFKEQS
FLPFYREEAEMLITRLKAGETIESALSGHPCYEKDLAAAVSHGQANGRLHRELYTYSQFMMERLEQNAEKYTGILQPVIY
GVVAGMILLVYMSMLMPMYQMMNQM
Nucleotide
Download Length: 1038 bp
>NTDB_id=143895 WV34_RS12165 WP_088613117.1 2418757..2419794(-) (comGB) [Bacillus amyloliquefaciens strain MT45]
ATGAAGCGGATTAAAAGAACCTGGCCGTTGAAGGACCAAGCTGCTTTTTTGAAAAGGCTCGGTGAAATGACGGAAAAAGG
GTACAGTCTGATTGAAGGGCTCAGACTGCTGAAACTCCAGCTCCATAAACGTCAGCTTGCAGAGCTGACGGACGGAATCC
GCCGACTGAGAGAAGGCGATGCGTTTTACCAAGTGCTTGAGGCACTGTCTTTTCATAAAGAAGCCGTCTCCATCTGCTAT
TTCGCGGAGAAACACGGAGAATTGCCGGGGGCGATGAAACAAAGCGGCGAATTGTTGCAGAGAAAGCTCATGCAGACGAA
TCAAATCAAAAAAATGCTCCGGTATCCGATGTTTTTAATATGTTCCGTCTTCGTCATGTTTTATATCCTGCAAAGTTTGA
TTATTCCGCAGTTTTCAGGGATTTATCAATCAATGAATATGAATACTTCCGGTGCGACTGCTTTCATCTTTGCGTTTTTT
CAGCATTTTCATGAAGCCTGCGCACTGGGGATGTCAGCCGTTCTCAGCTTGTTTTTGTACGTTTGGTTCTTATGTAAGAA
AAAATCCCCGCAAGACAAAATGCTAATCGTTGTGAAAATCCCCCTGATAGGAAAAGCGGCCGTTCTTTTTAACAGCTACT
TTTTCTCTTTACAGCTCAGCAGTCTTCTGAAATCCGGTCTATCTATCTACGACAGCTTAACGGCTTTTAAAGAACAATCT
TTTCTGCCTTTTTACCGTGAAGAAGCAGAGATGCTCATTACACGTTTGAAAGCCGGTGAAACCATAGAATCTGCTCTTTC
CGGCCATCCGTGTTATGAAAAAGACCTTGCGGCGGCAGTCAGTCACGGACAGGCAAACGGCCGGCTTCATCGCGAACTTT
ATACGTACAGCCAGTTTATGATGGAGCGTCTTGAACAAAACGCGGAGAAGTATACCGGTATTCTCCAGCCTGTCATTTAC
GGTGTTGTGGCCGGTATGATCTTACTTGTGTATATGTCAATGCTGATGCCGATGTACCAGATGATGAACCAAATGTAA
ATGAAGCGGATTAAAAGAACCTGGCCGTTGAAGGACCAAGCTGCTTTTTTGAAAAGGCTCGGTGAAATGACGGAAAAAGG
GTACAGTCTGATTGAAGGGCTCAGACTGCTGAAACTCCAGCTCCATAAACGTCAGCTTGCAGAGCTGACGGACGGAATCC
GCCGACTGAGAGAAGGCGATGCGTTTTACCAAGTGCTTGAGGCACTGTCTTTTCATAAAGAAGCCGTCTCCATCTGCTAT
TTCGCGGAGAAACACGGAGAATTGCCGGGGGCGATGAAACAAAGCGGCGAATTGTTGCAGAGAAAGCTCATGCAGACGAA
TCAAATCAAAAAAATGCTCCGGTATCCGATGTTTTTAATATGTTCCGTCTTCGTCATGTTTTATATCCTGCAAAGTTTGA
TTATTCCGCAGTTTTCAGGGATTTATCAATCAATGAATATGAATACTTCCGGTGCGACTGCTTTCATCTTTGCGTTTTTT
CAGCATTTTCATGAAGCCTGCGCACTGGGGATGTCAGCCGTTCTCAGCTTGTTTTTGTACGTTTGGTTCTTATGTAAGAA
AAAATCCCCGCAAGACAAAATGCTAATCGTTGTGAAAATCCCCCTGATAGGAAAAGCGGCCGTTCTTTTTAACAGCTACT
TTTTCTCTTTACAGCTCAGCAGTCTTCTGAAATCCGGTCTATCTATCTACGACAGCTTAACGGCTTTTAAAGAACAATCT
TTTCTGCCTTTTTACCGTGAAGAAGCAGAGATGCTCATTACACGTTTGAAAGCCGGTGAAACCATAGAATCTGCTCTTTC
CGGCCATCCGTGTTATGAAAAAGACCTTGCGGCGGCAGTCAGTCACGGACAGGCAAACGGCCGGCTTCATCGCGAACTTT
ATACGTACAGCCAGTTTATGATGGAGCGTCTTGAACAAAACGCGGAGAAGTATACCGGTATTCTCCAGCCTGTCATTTAC
GGTGTTGTGGCCGGTATGATCTTACTTGTGTATATGTCAATGCTGATGCCGATGTACCAGATGATGAACCAAATGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGB | Bacillus subtilis subsp. subtilis str. 168 |
66.873 |
93.623 |
0.626 |