Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   WV34_RS11920 Genome accession   NZ_CP011252
Coordinates   2379431..2380231 (-) Length   266 a.a.
NCBI ID   WP_045510705.1    Uniprot ID   A0AAP7TAW5
Organism   Bacillus amyloliquefaciens strain MT45     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2374431..2385231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WV34_RS11895 (WV34_11610) - 2374913..2375545 (+) 633 WP_013352819.1 helix-turn-helix domain-containing protein -
  WV34_RS20150 - 2375838..2375975 (+) 138 WP_014470646.1 hypothetical protein -
  WV34_RS11900 (WV34_11615) - 2376069..2377187 (+) 1119 WP_065522919.1 NADH-dependent flavin oxidoreductase -
  WV34_RS11905 (WV34_11620) - 2377314..2377526 (+) 213 WP_014470647.1 spore germination protein -
  WV34_RS11910 (WV34_11625) - 2377651..2377863 (+) 213 WP_013352823.1 spore germination protein -
  WV34_RS11915 (WV34_11630) alr 2378049..2379230 (+) 1182 WP_088613099.1 alanine racemase -
  WV34_RS11920 (WV34_11635) spo0A 2379431..2380231 (-) 801 WP_045510705.1 sporulation transcription factor Spo0A Regulator
  WV34_RS11925 (WV34_11640) spoIVB 2380512..2381792 (-) 1281 WP_088613100.1 SpoIVB peptidase -
  WV34_RS11930 (WV34_11645) recN 2381956..2383686 (-) 1731 WP_071348031.1 DNA repair protein RecN Machinery gene
  WV34_RS11935 (WV34_11650) argR 2383718..2384167 (-) 450 WP_013352828.1 transcriptional regulator ArgR -
  WV34_RS11940 (WV34_11655) - 2384264..2385109 (-) 846 WP_013352829.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29572.07 Da        Isoelectric Point: 6.3903

>NTDB_id=143887 WV34_RS11920 WP_045510705.1 2379431..2380231(-) (spo0A) [Bacillus amyloliquefaciens strain MT45]
MEKIKVCVADDNRELVSLLSEYIEGQDDMEVIGVAYNGQECLSLFKDKNPDVLVLDIIMPHLDGLAVLERLRESELAKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNVSSVTHRAPSAQSSIIRSQPEPKRKNLDASITSII
HEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=143887 WV34_RS11920 WP_045510705.1 2379431..2380231(-) (spo0A) [Bacillus amyloliquefaciens strain MT45]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTTGTAAGCCTGTTGAGTGAATATATAGAGGGACAGGA
TGATATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTTTCTTTGTTTAAAGATAAAAATCCCGATGTGCTCG
TTTTAGACATTATTATGCCGCATCTGGACGGTCTTGCGGTTTTGGAGCGCCTCCGGGAATCAGAACTTGCGAAGCAGCCG
AATGTCATCATGCTGACGGCATTCGGTCAGGAAGACGTTACGAAAAAAGCCGTCGATTTAGGTGCGTCTTACTTCATCCT
GAAGCCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTAAGCGGAAATGTCAGCAGCGTCACACACCGTGCGC
CGTCCGCGCAAAGCAGCATCATCCGCAGTCAGCCTGAACCGAAGCGGAAAAATCTCGATGCCAGCATTACAAGCATTATC
CATGAGATCGGTGTGCCTGCCCATATCAAAGGCTATCTTTATTTGCGTGAAGCCATTTCCATGGTGTATAACGATATTGA
ACTCCTCGGCAGCATCACAAAAGTCCTTTATCCCGACATCGCCAAAAAATTCAACACGACCGCAAGCCGTGTAGAACGGG
CCATCCGCCATGCCATTGAAGTCGCATGGAGCAGGGGAAATATTGACTCCATTTCTTCGCTGTTCGGGTATACTGTAAGC
ATGACAAAAGCAAAACCAACCAACTCAGAATTCATCGCGATGGTTGCTGACAAGCTGAGATTGGAGCATAAAGCTTCATA
A

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-119)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

96.629

100

0.97

Multiple sequence alignment