Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   WV34_RS10930 Genome accession   NZ_CP011252
Coordinates   2200787..2201395 (+) Length   202 a.a.
NCBI ID   WP_014470057.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MT45     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2195787..2206395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WV34_RS10890 (WV34_10630) - 2196851..2197357 (-) 507 WP_088613014.1 PTS glucose transporter subunit IIA -
  WV34_RS10895 (WV34_10635) - 2197494..2197907 (+) 414 WP_080735866.1 Hsp20/alpha crystallin family protein -
  WV34_RS10900 (WV34_10640) - 2197937..2198362 (-) 426 WP_227014198.1 YppG family protein -
  WV34_RS10905 (WV34_10645) - 2198551..2198733 (+) 183 WP_003153532.1 YppF family protein -
  WV34_RS10910 (WV34_10650) - 2198772..2199140 (-) 369 WP_045511095.1 YppE family protein -
  WV34_RS10915 (WV34_10655) - 2199186..2199431 (-) 246 WP_045511092.1 DUF5446 family protein -
  WV34_RS10920 (WV34_10660) sspM 2199636..2199740 (+) 105 WP_088613015.1 acid-soluble spore protein SspM -
  WV34_RS10925 (WV34_10665) - 2199783..2200745 (-) 963 WP_088613016.1 DUF2515 domain-containing protein -
  WV34_RS10930 (WV34_10670) recU 2200787..2201395 (+) 609 WP_014470057.1 Holliday junction resolvase RecU Machinery gene
  WV34_RS10935 (WV34_10675) - 2201434..2204214 (+) 2781 WP_088613017.1 PBP1A family penicillin-binding protein -
  WV34_RS10940 (WV34_10680) - 2204293..2204784 (-) 492 WP_088613018.1 YpoC family protein -
  WV34_RS10945 (WV34_10685) nth 2204781..2205440 (-) 660 WP_016939068.1 endonuclease III -
  WV34_RS10950 (WV34_10690) dnaD 2205459..2206157 (-) 699 WP_013352649.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23738.77 Da        Isoelectric Point: 9.2648

>NTDB_id=143886 WV34_RS10930 WP_014470057.1 2200787..2201395(+) (recU) [Bacillus amyloliquefaciens strain MT45]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNQYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFEKVYFLEADKLFVFWERKE
NNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=143886 WV34_RS10930 WP_014470057.1 2200787..2201395(+) (recU) [Bacillus amyloliquefaciens strain MT45]
GTGATTCGGTATCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCCCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATCAATATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCATTATCCGAAAAGAAGCGCCGCAGTTATTAAGGAAGCTTAT
TTTAAGCAGTCTTCGACAACCGATTACAACGGAATTTATAAAGGGCGTTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTAGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGAAAAGGTTTATTTCCTCGAAGCTGACAAGCTGTTTGTCTTTTGGGAAAGAAAGGAG
AACAACGGCAGAAAGTCAATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

89.95

98.515

0.886

Multiple sequence alignment