Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   WV34_RS09285 Genome accession   NZ_CP011252
Coordinates   1871675..1872046 (+) Length   123 a.a.
NCBI ID   WP_235608464.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MT45     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1866675..1877046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WV34_RS09280 (WV34_09080) - 1870111..1871322 (-) 1212 WP_088613856.1 cytochrome P450 -
  WV34_RS09285 (WV34_09085) nucA/comI 1871675..1872046 (+) 372 WP_235608464.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  WV34_RS09290 (WV34_09090) - 1872130..1872861 (+) 732 WP_065521249.1 YoaK family protein -
  WV34_RS09295 (WV34_09095) - 1872896..1873258 (-) 363 WP_088612839.1 hypothetical protein -
  WV34_RS09300 (WV34_09100) - 1873451..1874779 (-) 1329 WP_088612840.1 S8 family peptidase -
  WV34_RS09305 (WV34_09105) - 1874963..1875196 (+) 234 WP_088612841.1 hypothetical protein -
  WV34_RS09310 (WV34_09110) - 1875451..1876158 (+) 708 WP_045506034.1 poly-gamma-glutamate hydrolase family protein -
  WV34_RS09315 (WV34_09115) - 1876218..1876670 (+) 453 WP_088612842.1 OsmC family protein -
  WV34_RS09320 (WV34_09120) - 1876684..1877037 (-) 354 WP_014470379.1 multidrug efflux SMR transporter -

Sequence

Protein


Download         Length: 123 a.a.        Molecular weight: 13379.82 Da        Isoelectric Point: 4.8942

>NTDB_id=143885 WV34_RS09285 WP_235608464.1 1871675..1872046(+) (nucA/comI) [Bacillus amyloliquefaciens strain MT45]
MGVGIHSENTAEAASRYDQVLYFPLLKYPETGNHIKDAISAGHSDICTIDRDGAEERRKESLKGIPTKPGFDRDEWPMAV
CTEGGAGADIRYVTPSDNRGAGSWVGNQMSGYSDGTRVLFIVQ

Nucleotide


Download         Length: 372 bp        

>NTDB_id=143885 WV34_RS09285 WP_235608464.1 1871675..1872046(+) (nucA/comI) [Bacillus amyloliquefaciens strain MT45]
ATGGGCGTCGGCATCCATTCGGAAAATACTGCGGAAGCCGCGTCCCGATACGATCAGGTGCTGTATTTCCCGCTGTTAAA
ATATCCGGAGACGGGGAATCATATAAAAGACGCCATTTCGGCAGGGCATTCTGACATTTGTACGATTGATCGTGACGGAG
CTGAGGAAAGAAGGAAAGAATCATTGAAAGGCATTCCGACAAAGCCCGGATTTGACCGTGATGAATGGCCGATGGCAGTC
TGTACGGAAGGCGGGGCAGGGGCTGACATCAGATATGTAACCCCTTCGGATAATCGCGGAGCCGGTTCATGGGTTGGAAA
TCAAATGAGCGGATATTCCGACGGTACGAGAGTATTATTTATCGTTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

64.486

86.992

0.561

Multiple sequence alignment