Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   WV34_RS07860 Genome accession   NZ_CP011252
Coordinates   1480571..1480855 (+) Length   94 a.a.
NCBI ID   WP_013352109.1    Uniprot ID   A0AAP7NBF5
Organism   Bacillus amyloliquefaciens strain MT45     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1475571..1485855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WV34_RS07835 (WV34_07660) - 1476820..1477728 (+) 909 WP_088612741.1 ketopantoate reductase family protein -
  WV34_RS07840 (WV34_07665) - 1477757..1478989 (-) 1233 WP_088612742.1 aminopeptidase -
  WV34_RS07845 - 1479090..1479224 (-) 135 WP_013352107.1 protein YkpC -
  WV34_RS07850 (WV34_07670) mreBH 1479295..1480302 (-) 1008 WP_013352108.1 cell shape-determining protein MreBH -
  WV34_RS07860 (WV34_07675) abrB 1480571..1480855 (+) 285 WP_013352109.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  WV34_RS07865 (WV34_07680) - 1481028..1482332 (+) 1305 WP_088612743.1 ATP-binding protein -
  WV34_RS07870 (WV34_07685) - 1482334..1483161 (+) 828 WP_088612744.1 gamma-glutamylcyclotransferase -
  WV34_RS07875 (WV34_07690) ktrC 1483202..1483867 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  WV34_RS07880 (WV34_07695) ade 1484017..1485750 (+) 1734 WP_088612745.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10542.41 Da        Isoelectric Point: 5.2168

>NTDB_id=143880 WV34_RS07860 WP_013352109.1 1480571..1480855(+) (abrB) [Bacillus amyloliquefaciens strain MT45]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPDNQEYGNGKIILSPEGAK
MLLEEIEEALKDKS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=143880 WV34_RS07860 WP_013352109.1 1480571..1480855(+) (abrB) [Bacillus amyloliquefaciens strain MT45]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAACTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAACCGCACGGCATTT
GCTTAATGACCGGAGAAATTACCCCTGATAATCAGGAGTACGGCAACGGTAAAATCATCTTAAGCCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCATTAAAAGATAAATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

56.522

97.872

0.553

Multiple sequence alignment