Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   WV34_RS07745 Genome accession   NZ_CP011252
Coordinates   1460058..1460654 (+) Length   198 a.a.
NCBI ID   WP_013352088.1    Uniprot ID   A0A9P1JH25
Organism   Bacillus amyloliquefaciens strain MT45     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1455058..1465654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WV34_RS07710 (WV34_07535) - 1455098..1455553 (+) 456 WP_045506413.1 flavodoxin -
  WV34_RS07715 (WV34_07540) dapD 1455635..1456345 (+) 711 WP_013352082.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  WV34_RS07720 (WV34_07545) - 1456416..1457540 (+) 1125 WP_088612731.1 N-acetyldiaminopimelate deacetylase -
  WV34_RS07725 (WV34_07550) - 1457601..1457846 (+) 246 WP_013352084.1 YkuS family protein -
  WV34_RS07730 (WV34_07555) - 1457880..1458686 (-) 807 WP_045506410.1 mechanosensitive ion channel family protein -
  WV34_RS07735 (WV34_07560) - 1458908..1459114 (+) 207 WP_227014223.1 peroxiredoxin -
  WV34_RS07740 (WV34_07565) - 1459136..1459594 (+) 459 WP_088612732.1 redoxin domain-containing protein -
  WV34_RS07745 (WV34_07570) rok 1460058..1460654 (+) 597 WP_013352088.1 transcriptional regulator Rok Regulator
  WV34_RS07750 (WV34_07575) - 1460675..1461667 (-) 993 WP_088612733.1 sporulation protein -
  WV34_RS07755 (WV34_07580) - 1461814..1462416 (+) 603 WP_088612734.1 molybdenum cofactor guanylyltransferase -
  WV34_RS07760 (WV34_07585) - 1462469..1463488 (+) 1020 WP_071346896.1 molybdopterin-synthase adenylyltransferase MoeB -
  WV34_RS07765 (WV34_07590) glp 1463506..1464798 (+) 1293 WP_088612735.1 gephyrin-like molybdotransferase Glp -
  WV34_RS07770 (WV34_07595) mobB 1464759..1465280 (+) 522 WP_088612736.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22539.60 Da        Isoelectric Point: 9.6909

>NTDB_id=143879 WV34_RS07745 WP_013352088.1 1460058..1460654(+) (rok) [Bacillus amyloliquefaciens strain MT45]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
TQPQSTQPQMQSITTLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETGNDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=143879 WV34_RS07745 WP_013352088.1 1460058..1460654(+) (rok) [Bacillus amyloliquefaciens strain MT45]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACGGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCAGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTACCAAAAGCCGCAG
ACACAGCCTCAATCCACCCAGCCGCAAATGCAGTCTATTACGACTCTTCCAGCCGGCATTCCAGACGGTTCTACTAGAAG
AAGAAGAGGGACCGCAAGACCGGGTTCAAAGGCGGCAAAACTGCGCGAAGCAGCCATTAAAACATTGAAACGCCACAATG
CAGCGATCAAAAGTTCAGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACCTTTATG
CAAAGCTTAATTAAAATGTATCCTGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGGAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

85.052

97.98

0.833

Multiple sequence alignment