Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   WV34_RS05820 Genome accession   NZ_CP011252
Coordinates   1112662..1113240 (+) Length   192 a.a.
NCBI ID   WP_013351744.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MT45     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1107662..1118240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WV34_RS05800 (WV34_05695) - 1108164..1109456 (-) 1293 WP_014471672.1 globin-coupled sensor protein -
  WV34_RS05805 (WV34_05700) - 1109579..1111102 (-) 1524 WP_088612539.1 FAD-dependent oxidoreductase -
  WV34_RS05810 (WV34_05705) - 1111226..1112083 (+) 858 WP_013351742.1 SDR family oxidoreductase -
  WV34_RS05815 (WV34_05710) - 1112113..1112346 (-) 234 WP_013351743.1 IDEAL domain-containing protein -
  WV34_RS05820 (WV34_05715) comK 1112662..1113240 (+) 579 WP_013351744.1 competence protein ComK Regulator
  WV34_RS05825 (WV34_05720) - 1113386..1113757 (+) 372 WP_088612540.1 iron chaperone -
  WV34_RS05830 (WV34_05725) - 1113793..1115004 (-) 1212 WP_088612541.1 GNAT family N-acetyltransferase -
  WV34_RS05835 (WV34_05730) - 1115159..1115869 (-) 711 WP_088612542.1 YrpD family protein -
  WV34_RS05840 (WV34_05735) - 1116065..1116334 (+) 270 WP_013351748.1 excalibur calcium-binding domain-containing protein -
  WV34_RS05845 (WV34_05740) - 1116366..1116677 (-) 312 WP_088612543.1 YbjQ family protein -
  WV34_RS05850 (WV34_05745) - 1116719..1118188 (-) 1470 WP_088612544.1 sodium:solute symporter -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22287.57 Da        Isoelectric Point: 8.1411

>NTDB_id=143867 WV34_RS05820 WP_013351744.1 1112662..1113240(+) (comK) [Bacillus amyloliquefaciens strain MT45]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HIPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=143867 WV34_RS05820 WP_013351744.1 1112662..1113240(+) (comK) [Bacillus amyloliquefaciens strain MT45]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTACGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGGTCATTGAAAAAGACTGCATTCTGTATGTCAGCATGAAGCCGATTCACATCATTGACAGAA
GCTGCCGCTACTTTGGCTCAAGCTATGCCGGGAGAAAAGCGGGAACATATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCAGCAAGGCCTCAATGCGGCTGGATATCTCA
CGTGCACGTTAAAGATTTTCAGCCGACCGCATTCGATGACACGGCGGTCACGTTCTCAAACGGCAAAACGATGGAGCTGG
AAGTATCCTACCATTCTTTTGAAAACCAAGTCTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGC
CATATCCCGAAGCGGCAGGAATTCATGCTGTACCCGAAAGAAGAGCGGACAAAAATGATCTACGACTTTATTTTGCGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

82.812

100

0.828

Multiple sequence alignment