Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   WV34_RS04740 Genome accession   NZ_CP011252
Coordinates   919485..920276 (+) Length   263 a.a.
NCBI ID   WP_088612449.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MT45     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 914485..925276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WV34_RS04715 (WV34_04645) - 916482..917366 (+) 885 WP_088612447.1 PhzF family phenazine biosynthesis isomerase -
  WV34_RS04720 (WV34_04650) - 917443..918027 (+) 585 WP_088612448.1 nitroreductase -
  WV34_RS04725 (WV34_04655) - 918064..918255 (-) 192 WP_013351432.1 YfhD family protein -
  WV34_RS04730 - 918326..918436 (-) 111 WP_003223230.1 YfhE family protein -
  WV34_RS04735 (WV34_04660) - 918494..919393 (-) 900 WP_071348575.1 TIGR01777 family oxidoreductase -
  WV34_RS04740 (WV34_04665) recX 919485..920276 (+) 792 WP_088612449.1 recombination regulator RecX Regulator
  WV34_RS04745 (WV34_04670) - 920283..920597 (+) 315 WP_071348576.1 YfhH family protein -
  WV34_RS04750 (WV34_04675) - 920740..921933 (+) 1194 WP_076983170.1 MFS transporter -
  WV34_RS04755 (WV34_04680) - 921972..922364 (-) 393 WP_088612450.1 DUF2606 family protein -
  WV34_RS04760 (WV34_04685) - 922327..923238 (-) 912 WP_088612451.1 serine protease -
  WV34_RS04765 (WV34_04690) - 923376..923528 (-) 153 WP_003155495.1 small, acid-soluble spore protein K -
  WV34_RS04770 (WV34_04695) - 923652..923921 (+) 270 WP_013351439.1 YfhJ family protein -
  WV34_RS04775 (WV34_04700) - 924054..924580 (+) 527 Protein_898 SH3 domain-containing protein -
  WV34_RS04780 (WV34_04705) - 924666..924998 (+) 333 WP_065523264.1 SdpI family protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 31023.26 Da        Isoelectric Point: 6.2753

>NTDB_id=143862 WV34_RS04740 WP_088612449.1 919485..920276(+) (recX) [Bacillus amyloliquefaciens strain MT45]
MPFITKISTQKKNTERFNIFLDEKYAFSVDADVLVRFDLKKGKELDELDILEISHGDEVKKAFNRAVEFLSYRMRSEKEV
RDHLKKKETPEMVISEVIHKLYDYRYLNDKEFAEAYASTHKKTNGKGPDVLFRELKAKGIDDDTIKETLSAFTFDEQIQE
ALKHIGKILKKDKKLSTKEIRQRAQMQLQRKGFPFDIINAALEQTEYENDDEAEMEALKTHAEKAIRKYRYDGSYESGMK
VKQYLFRKGFSIDDIEQFLQEEE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=143862 WV34_RS04740 WP_088612449.1 919485..920276(+) (recX) [Bacillus amyloliquefaciens strain MT45]
ATGCCGTTTATTACAAAAATATCGACCCAAAAGAAAAATACCGAGCGCTTCAACATCTTTCTTGATGAGAAATATGCATT
CAGCGTCGACGCCGACGTGCTTGTGCGTTTTGACCTGAAAAAAGGAAAAGAACTGGACGAGCTTGACATTCTTGAAATCA
GTCACGGCGATGAAGTGAAAAAAGCCTTTAACCGCGCCGTCGAATTTTTATCATACCGGATGCGCTCTGAAAAAGAAGTC
CGGGACCACTTGAAGAAAAAAGAAACACCTGAGATGGTCATTTCTGAAGTCATCCATAAACTGTACGATTACCGCTACTT
AAATGACAAAGAATTTGCCGAAGCCTATGCGAGCACCCACAAAAAAACAAACGGCAAAGGGCCTGACGTCCTGTTTCGCG
AGCTGAAAGCGAAAGGAATAGACGACGATACCATAAAGGAGACGCTCAGTGCGTTTACGTTTGACGAGCAGATACAGGAA
GCGCTGAAACATATCGGGAAAATCCTGAAAAAAGACAAAAAGCTGTCCACAAAAGAGATCAGACAGCGGGCGCAGATGCA
GCTTCAGCGAAAAGGTTTCCCTTTCGACATCATCAATGCCGCTCTGGAGCAGACGGAGTATGAGAATGATGACGAAGCTG
AGATGGAAGCTTTGAAGACTCATGCGGAAAAAGCAATCAGGAAATACCGCTATGACGGCAGCTATGAAAGCGGAATGAAG
GTCAAGCAGTACTTATTCAGAAAAGGATTCTCGATTGACGACATTGAACAATTTTTGCAGGAAGAGGAGTAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

79.087

100

0.791

Multiple sequence alignment