Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   WV34_RS01760 Genome accession   NZ_CP011252
Coordinates   323815..324252 (-) Length   145 a.a.
NCBI ID   WP_013350968.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MT45     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 318815..329252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WV34_RS01735 (WV34_01705) - 319832..320968 (+) 1137 WP_088613814.1 zinc-dependent alcohol dehydrogenase -
  WV34_RS01740 (WV34_01710) - 320983..321417 (+) 435 WP_013350964.1 RDD family protein -
  WV34_RS01745 (WV34_01715) - 321491..321814 (+) 324 WP_013350965.1 YckD family protein -
  WV34_RS01750 (WV34_01720) - 321919..323355 (+) 1437 WP_088612128.1 family 1 glycosylhydrolase -
  WV34_RS01755 (WV34_01725) nin/comJ 323396..323794 (-) 399 WP_013350967.1 competence protein ComJ Regulator
  WV34_RS01760 (WV34_01730) nucA/comI 323815..324252 (-) 438 WP_013350968.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  WV34_RS01765 (WV34_01735) hxlB 324598..325155 (-) 558 WP_088612129.1 6-phospho-3-hexuloisomerase -
  WV34_RS01770 (WV34_01740) hxlA 325152..325787 (-) 636 WP_088612130.1 3-hexulose-6-phosphate synthase -
  WV34_RS01775 (WV34_01745) - 326019..326381 (+) 363 WP_013350971.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=143857 WV34_RS01760 WP_013350968.1 323815..324252(-) (nucA/comI) [Bacillus amyloliquefaciens strain MT45]
MKTLKALLLVLIIIAGAVAALIKGDIFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=143857 WV34_RS01760 WP_013350968.1 323815..324252(-) (nucA/comI) [Bacillus amyloliquefaciens strain MT45]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATATTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAGGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTAAAAACAGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAATAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCAGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment