Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | WV34_RS00510 | Genome accession | NZ_CP011252 |
| Coordinates | 98514..100949 (+) | Length | 811 a.a. |
| NCBI ID | WP_065521559.1 | Uniprot ID | - |
| Organism | Bacillus amyloliquefaciens strain MT45 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 93514..105949
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WV34_RS00495 (WV34_00490) | ctsR | 96391..96855 (+) | 465 | WP_003156396.1 | transcriptional regulator CtsR | - |
| WV34_RS00500 (WV34_00495) | - | 96869..97426 (+) | 558 | WP_088612046.1 | UvrB/UvrC motif-containing protein | - |
| WV34_RS00505 (WV34_00500) | - | 97426..98517 (+) | 1092 | WP_013350790.1 | protein arginine kinase | - |
| WV34_RS00510 (WV34_00505) | clpC | 98514..100949 (+) | 2436 | WP_065521559.1 | ATP-dependent protease ATP-binding subunit ClpC | Regulator |
| WV34_RS00515 (WV34_00510) | radA | 101043..102422 (+) | 1380 | WP_045514053.1 | DNA repair protein RadA | Machinery gene |
| WV34_RS00520 (WV34_00515) | disA | 102426..103508 (+) | 1083 | WP_014469611.1 | DNA integrity scanning diadenylate cyclase DisA | - |
| WV34_RS00525 (WV34_00520) | - | 103622..104722 (+) | 1101 | WP_013350794.1 | PIN/TRAM domain-containing protein | - |
| WV34_RS00530 (WV34_00525) | ispD | 104736..105434 (+) | 699 | WP_088613806.1 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | - |
| WV34_RS00535 (WV34_00530) | ispF | 105427..105903 (+) | 477 | WP_013350796.1 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | - |
Sequence
Protein
Download Length: 811 a.a. Molecular weight: 90177.67 Da Isoelectric Point: 5.9528
>NTDB_id=143853 WV34_RS00510 WP_065521559.1 98514..100949(+) (clpC) [Bacillus amyloliquefaciens strain MT45]
MMFGRFTERAQKVLALAQEEALRLGHTNIGTEHILLGLVREGEGIAFKALEALGLNSDKMQKEVESLIGRGQESTTSVPH
YTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNETGTSGAGTNSSAN
TPTLDSLARDLTAIAREDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRV
MTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDE
YRKYIEKDAALERRFQPIQVDEPSVDESIQILKGLRDRYEAHHRVSITDEAIEAAVKLSDRYISDRFLPDKAIDLIDEAG
SKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKTWKEKQGQENSEVSVEDIAMV
VSSWTGVPVSKIAQTETDKLLNMESILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALA
ESIFGDEEAMIRVDMSEYMEKHSTSRLVGSPPGYVGYDEGGQLTEKVRRKPYSVVLLDEIEKAHPDVFNILLQVLEDGRL
TDSKGRTVDFRNTILIMTSNVGASELKRNKYVGFNVQDESQNHKDMKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHL
TDIVSLMSDQLTKRLKEQDLSIELTEAAKAKVADEGVDLEYGARPLRRAIQKHVEDRLSEELLRGNIDKGQHIVLDVEDG
KFVVKTTAKTN
MMFGRFTERAQKVLALAQEEALRLGHTNIGTEHILLGLVREGEGIAFKALEALGLNSDKMQKEVESLIGRGQESTTSVPH
YTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNETGTSGAGTNSSAN
TPTLDSLARDLTAIAREDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRV
MTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDE
YRKYIEKDAALERRFQPIQVDEPSVDESIQILKGLRDRYEAHHRVSITDEAIEAAVKLSDRYISDRFLPDKAIDLIDEAG
SKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKTWKEKQGQENSEVSVEDIAMV
VSSWTGVPVSKIAQTETDKLLNMESILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALA
ESIFGDEEAMIRVDMSEYMEKHSTSRLVGSPPGYVGYDEGGQLTEKVRRKPYSVVLLDEIEKAHPDVFNILLQVLEDGRL
TDSKGRTVDFRNTILIMTSNVGASELKRNKYVGFNVQDESQNHKDMKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHL
TDIVSLMSDQLTKRLKEQDLSIELTEAAKAKVADEGVDLEYGARPLRRAIQKHVEDRLSEELLRGNIDKGQHIVLDVEDG
KFVVKTTAKTN
Nucleotide
Download Length: 2436 bp
>NTDB_id=143853 WV34_RS00510 WP_065521559.1 98514..100949(+) (clpC) [Bacillus amyloliquefaciens strain MT45]
ATGATGTTTGGAAGATTTACAGAGCGAGCTCAAAAGGTATTGGCACTGGCACAGGAAGAAGCATTGCGCTTAGGCCATAC
AAATATCGGAACTGAACATATATTATTGGGGTTAGTCCGTGAAGGTGAAGGGATAGCATTTAAAGCTTTAGAAGCGCTTG
GCCTCAATTCAGATAAAATGCAAAAAGAAGTGGAAAGTTTGATTGGCCGAGGACAGGAAAGCACCACATCTGTCCCTCAT
TACACGCCTCGAGCCAAAAAGGTAATAGAACTATCAATGGATGAAGCCAGAAAGCTGGGACATTCTTATGTAGGAACAGA
ACACATACTTCTCGGGCTGATTCGTGAAGGTGAGGGAGTCGCCGCGAGAGTTCTGAATAATCTGGGTGTCAGTCTTAATA
AGGCGAGACAACAGGTTCTGCAGCTTCTCGGAAGCAATGAAACAGGGACATCTGGAGCCGGGACAAATAGCAGCGCAAAC
ACGCCGACGCTTGACAGTCTGGCGCGTGATTTAACTGCAATTGCGAGGGAAGACAGCCTTGATCCGGTTATCGGCCGAAG
CAAAGAAATTCAGCGTGTTATTGAGGTATTAAGCCGCAGAACAAAGAATAACCCTGTTCTTATTGGAGAACCGGGTGTAG
GTAAAACTGCGATTGCCGAAGGCCTCGCACAGCAGATCATCAACAATGAAGTGCCGGAAATTTTACGTGATAAACGCGTA
ATGACGTTAGATATGGGAACGGTTGTAGCCGGTACGAAATATCGCGGAGAATTTGAAGACCGCCTGAAAAAGGTAATGGA
TGAAATACGTCAGGCCGGCAATATCATTTTATTCATTGATGAACTGCACACACTGATCGGAGCGGGAGGAGCAGAAGGTG
CGATTGACGCGTCGAATATTTTAAAACCTTCACTCGCTCGCGGAGAGCTTCAGTGCATCGGTGCGACAACGCTTGATGAG
TACCGCAAATATATCGAAAAAGACGCAGCCCTGGAGCGCCGTTTCCAGCCGATTCAGGTGGATGAGCCGTCAGTCGATGA
AAGCATTCAAATTTTAAAAGGGCTCCGTGACCGCTATGAAGCGCATCACCGCGTATCCATTACCGATGAAGCGATCGAAG
CGGCGGTTAAATTGTCCGACCGTTATATATCTGACCGCTTCCTTCCGGATAAAGCGATCGATTTAATTGACGAAGCCGGT
TCAAAAGTGCGTCTCCGTTCTTTCACAACGCCTCCGAACTTAAAAGAGCTTGAGCAGAAGCTTGATGAAGTTCGCAAGGA
AAAAGACGCTGCCGTTCAAAGCCAGGAATTTGAAAAAGCGGCTTCTCTTCGTGATACGGAGCAGCGCCTGAGAGAACAGG
TGGAAGATACGAAAAAAACGTGGAAAGAAAAACAAGGTCAAGAGAACTCCGAAGTTTCTGTAGAAGATATCGCGATGGTT
GTATCCAGCTGGACCGGGGTGCCTGTATCTAAAATTGCGCAAACTGAAACAGATAAGCTTCTCAATATGGAAAGCATTCT
GCACTCCCGCGTCATTGGCCAGGATGAAGCCGTTGTAGCCGTTGCAAAGGCTGTGAGACGTGCAAGAGCCGGTCTGAAGG
ATCCGAAACGTCCGATTGGTTCATTCATCTTCTTAGGTCCTACAGGCGTAGGGAAGACAGAGCTGGCAAGAGCGCTGGCG
GAATCCATTTTCGGTGATGAGGAAGCGATGATCAGAGTGGATATGTCCGAATACATGGAGAAACATTCGACTTCACGCCT
TGTCGGTTCTCCTCCGGGATATGTCGGCTATGATGAAGGCGGCCAGCTGACAGAAAAAGTGAGAAGAAAACCTTACTCTG
TCGTACTGCTTGATGAAATTGAAAAAGCGCATCCTGATGTGTTTAACATTCTCTTGCAAGTGCTCGAAGACGGACGCTTG
ACTGATTCAAAAGGACGCACTGTTGATTTCCGCAACACGATCCTGATTATGACGTCAAACGTCGGAGCGAGTGAGCTGAA
ACGCAACAAATATGTCGGCTTCAATGTTCAGGATGAATCACAAAACCATAAAGACATGAAAGACAAAGTGATGGGAGAGC
TGAAGCGTGCCTTCAGGCCTGAGTTTATCAACCGGATTGACGAAATTATCGTCTTCCACTCCCTTGAGAAAAAACATCTT
ACAGACATCGTGTCGCTTATGTCTGACCAGTTAACAAAACGTCTGAAAGAACAAGATCTCTCTATAGAGCTGACAGAAGC
TGCAAAAGCAAAAGTAGCAGACGAGGGCGTCGATTTGGAATACGGCGCACGTCCGTTAAGAAGAGCGATCCAGAAGCATG
TGGAGGACCGTTTATCAGAAGAGCTCCTCAGAGGCAATATTGATAAAGGGCAGCACATCGTTCTTGATGTTGAGGACGGC
AAATTTGTCGTAAAAACAACTGCTAAAACGAACTAA
ATGATGTTTGGAAGATTTACAGAGCGAGCTCAAAAGGTATTGGCACTGGCACAGGAAGAAGCATTGCGCTTAGGCCATAC
AAATATCGGAACTGAACATATATTATTGGGGTTAGTCCGTGAAGGTGAAGGGATAGCATTTAAAGCTTTAGAAGCGCTTG
GCCTCAATTCAGATAAAATGCAAAAAGAAGTGGAAAGTTTGATTGGCCGAGGACAGGAAAGCACCACATCTGTCCCTCAT
TACACGCCTCGAGCCAAAAAGGTAATAGAACTATCAATGGATGAAGCCAGAAAGCTGGGACATTCTTATGTAGGAACAGA
ACACATACTTCTCGGGCTGATTCGTGAAGGTGAGGGAGTCGCCGCGAGAGTTCTGAATAATCTGGGTGTCAGTCTTAATA
AGGCGAGACAACAGGTTCTGCAGCTTCTCGGAAGCAATGAAACAGGGACATCTGGAGCCGGGACAAATAGCAGCGCAAAC
ACGCCGACGCTTGACAGTCTGGCGCGTGATTTAACTGCAATTGCGAGGGAAGACAGCCTTGATCCGGTTATCGGCCGAAG
CAAAGAAATTCAGCGTGTTATTGAGGTATTAAGCCGCAGAACAAAGAATAACCCTGTTCTTATTGGAGAACCGGGTGTAG
GTAAAACTGCGATTGCCGAAGGCCTCGCACAGCAGATCATCAACAATGAAGTGCCGGAAATTTTACGTGATAAACGCGTA
ATGACGTTAGATATGGGAACGGTTGTAGCCGGTACGAAATATCGCGGAGAATTTGAAGACCGCCTGAAAAAGGTAATGGA
TGAAATACGTCAGGCCGGCAATATCATTTTATTCATTGATGAACTGCACACACTGATCGGAGCGGGAGGAGCAGAAGGTG
CGATTGACGCGTCGAATATTTTAAAACCTTCACTCGCTCGCGGAGAGCTTCAGTGCATCGGTGCGACAACGCTTGATGAG
TACCGCAAATATATCGAAAAAGACGCAGCCCTGGAGCGCCGTTTCCAGCCGATTCAGGTGGATGAGCCGTCAGTCGATGA
AAGCATTCAAATTTTAAAAGGGCTCCGTGACCGCTATGAAGCGCATCACCGCGTATCCATTACCGATGAAGCGATCGAAG
CGGCGGTTAAATTGTCCGACCGTTATATATCTGACCGCTTCCTTCCGGATAAAGCGATCGATTTAATTGACGAAGCCGGT
TCAAAAGTGCGTCTCCGTTCTTTCACAACGCCTCCGAACTTAAAAGAGCTTGAGCAGAAGCTTGATGAAGTTCGCAAGGA
AAAAGACGCTGCCGTTCAAAGCCAGGAATTTGAAAAAGCGGCTTCTCTTCGTGATACGGAGCAGCGCCTGAGAGAACAGG
TGGAAGATACGAAAAAAACGTGGAAAGAAAAACAAGGTCAAGAGAACTCCGAAGTTTCTGTAGAAGATATCGCGATGGTT
GTATCCAGCTGGACCGGGGTGCCTGTATCTAAAATTGCGCAAACTGAAACAGATAAGCTTCTCAATATGGAAAGCATTCT
GCACTCCCGCGTCATTGGCCAGGATGAAGCCGTTGTAGCCGTTGCAAAGGCTGTGAGACGTGCAAGAGCCGGTCTGAAGG
ATCCGAAACGTCCGATTGGTTCATTCATCTTCTTAGGTCCTACAGGCGTAGGGAAGACAGAGCTGGCAAGAGCGCTGGCG
GAATCCATTTTCGGTGATGAGGAAGCGATGATCAGAGTGGATATGTCCGAATACATGGAGAAACATTCGACTTCACGCCT
TGTCGGTTCTCCTCCGGGATATGTCGGCTATGATGAAGGCGGCCAGCTGACAGAAAAAGTGAGAAGAAAACCTTACTCTG
TCGTACTGCTTGATGAAATTGAAAAAGCGCATCCTGATGTGTTTAACATTCTCTTGCAAGTGCTCGAAGACGGACGCTTG
ACTGATTCAAAAGGACGCACTGTTGATTTCCGCAACACGATCCTGATTATGACGTCAAACGTCGGAGCGAGTGAGCTGAA
ACGCAACAAATATGTCGGCTTCAATGTTCAGGATGAATCACAAAACCATAAAGACATGAAAGACAAAGTGATGGGAGAGC
TGAAGCGTGCCTTCAGGCCTGAGTTTATCAACCGGATTGACGAAATTATCGTCTTCCACTCCCTTGAGAAAAAACATCTT
ACAGACATCGTGTCGCTTATGTCTGACCAGTTAACAAAACGTCTGAAAGAACAAGATCTCTCTATAGAGCTGACAGAAGC
TGCAAAAGCAAAAGTAGCAGACGAGGGCGTCGATTTGGAATACGGCGCACGTCCGTTAAGAAGAGCGATCCAGAAGCATG
TGGAGGACCGTTTATCAGAAGAGCTCCTCAGAGGCAATATTGATAAAGGGCAGCACATCGTTCTTGATGTTGAGGACGGC
AAATTTGTCGTAAAAACAACTGCTAAAACGAACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
96.178 |
100 |
0.962 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
49.261 |
100 |
0.493 |
| clpC | Streptococcus thermophilus LMD-9 |
46.481 |
100 |
0.472 |
| clpC | Streptococcus thermophilus LMG 18311 |
46.238 |
100 |
0.47 |
| clpC | Streptococcus mutans UA159 |
44.418 |
100 |
0.456 |
| clpC | Streptococcus pneumoniae Rx1 |
45.264 |
100 |
0.454 |
| clpC | Streptococcus pneumoniae D39 |
45.264 |
100 |
0.454 |
| clpC | Streptococcus pneumoniae TIGR4 |
45.141 |
100 |
0.453 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
49.298 |
87.793 |
0.433 |
| clpE | Streptococcus mutans UA159 |
53.929 |
80.025 |
0.432 |
| clpE | Streptococcus pneumoniae TIGR4 |
52.417 |
81.628 |
0.428 |
| clpE | Streptococcus pneumoniae Rx1 |
52.417 |
81.628 |
0.428 |
| clpE | Streptococcus pneumoniae D39 |
52.417 |
81.628 |
0.428 |
| clpE | Streptococcus pneumoniae R6 |
52.417 |
81.628 |
0.428 |