Detailed information NTG0143829

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: DPADHS01_RS08045
• Genome accession: NZ_CP013993
• Coordinates: 1663998..1665002 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa DHS01 strain DH01
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1658998..1670002

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DPADHS01_RS08015 (DPADHS01_08015)	fghA	1659090..1659941 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
DPADHS01_RS08020 (DPADHS01_08020)	ispF	1660012..1660485 (+)	474	WP_023465018.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
DPADHS01_RS08025 (DPADHS01_08025)	truD	1660482..1661549 (+)	1068	WP_023114621.1	tRNA pseudouridine(13) synthase TruD	-
DPADHS01_RS08030 (DPADHS01_08030)	surE	1661537..1662286 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
DPADHS01_RS08035 (DPADHS01_08035)	-	1662319..1662954 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
DPADHS01_RS08040 (DPADHS01_08040)	-	1663000..1663893 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
DPADHS01_RS08045 (DPADHS01_08045)	rpoS	1663998..1665002 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
DPADHS01_RS08050 (DPADHS01_08050)	fdxA	1665429..1665752 (-)	324	WP_003092272.1	ferredoxin FdxA	-
DPADHS01_RS08055 (DPADHS01_08055)	mutS	1665819..1668386 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
DPADHS01_RS08060 (DPADHS01_08060)	-	1668512..1669519 (-)	1008	WP_003098486.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=143829 DPADHS01_RS08045 WP_003113871.1 1663998..1665002(+) (rpoS) [Pseudomonas aeruginosa DHS01 strain DH01]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=143829 DPADHS01_RS08045 WP_003113871.1 1663998..1665002(+) (rpoS) [Pseudomonas aeruginosa DHS01 strain DH01]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653