Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   APT60_RS09955 Genome accession   NZ_CP013989
Coordinates   2155189..2155803 (-) Length   204 a.a.
NCBI ID   WP_003091196.1    Uniprot ID   Q02PH1
Organism   Pseudomonas aeruginosa strain USDA-ARS-USMARC-41639     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2150189..2160803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APT60_RS09930 (APT60_09930) - 2150646..2150909 (+) 264 WP_003109484.1 DUF1653 domain-containing protein -
  APT60_RS09935 (APT60_09935) topA 2151000..2153606 (+) 2607 WP_003091201.1 type I DNA topoisomerase -
  APT60_RS09940 (APT60_09940) - 2153713..2154231 (+) 519 WP_003091199.1 DUF6586 family protein -
  APT60_RS09945 (APT60_09945) - 2154437..2154670 (+) 234 WP_003109483.1 hypothetical protein -
  APT60_RS09950 (APT60_09950) sulA 2154692..2155177 (-) 486 WP_003091197.1 SOS-induced cell division inhibitor SulA -
  APT60_RS09955 (APT60_09955) dinR/lexA 2155189..2155803 (-) 615 WP_003091196.1 transcriptional repressor LexA Regulator
  APT60_RS09960 (APT60_09960) psrA 2156035..2156736 (+) 702 WP_016253195.1 transcriptional regulator PsrA -
  APT60_RS09965 (APT60_09965) nagZ 2156938..2157936 (+) 999 WP_003118092.1 beta-N-acetylhexosaminidase -
  APT60_RS09970 (APT60_09970) - 2157948..2158685 (+) 738 WP_003091193.1 S-methyl-5'-thioinosine phosphorylase -
  APT60_RS09975 (APT60_09975) - 2158713..2159342 (-) 630 WP_003091190.1 CsiV family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22505.95 Da        Isoelectric Point: 6.4989

>NTDB_id=143741 APT60_RS09955 WP_003091196.1 2155189..2155803(-) (dinR/lexA) [Pseudomonas aeruginosa strain USDA-ARS-USMARC-41639]
MQKLTPRQAEILSFIKRCLEDHGFPPTRAEIAQELGFKSPNAAEEHLKALARKGAIEMTPGASRGIRIPGFEPHAANDDE
GLPVIGRVAAGAPILAEQNIEESCRINPAFFNPRADYLLRVRGMSMKDIGILDGDLLAVHVTREARNGQVVVARIGEEVT
VKRFKREGSKVWLLAENPEFAPIEVDLKEQELIIEGLSVGVIRR

Nucleotide


Download         Length: 615 bp        

>NTDB_id=143741 APT60_RS09955 WP_003091196.1 2155189..2155803(-) (dinR/lexA) [Pseudomonas aeruginosa strain USDA-ARS-USMARC-41639]
ATGCAGAAGCTGACGCCCCGCCAAGCCGAGATCCTCTCCTTCATCAAGCGCTGCCTGGAAGACCACGGCTTTCCGCCGAC
CCGGGCGGAAATCGCCCAGGAACTCGGCTTCAAGTCGCCGAACGCCGCCGAGGAGCACCTCAAGGCGCTGGCACGCAAGG
GCGCCATCGAAATGACTCCGGGCGCCTCTCGCGGCATCCGCATTCCCGGCTTCGAACCGCATGCCGCCAACGACGATGAG
GGCCTGCCGGTGATCGGACGGGTCGCCGCCGGCGCACCGATCCTCGCCGAACAGAACATCGAGGAATCCTGCCGTATCAA
TCCCGCCTTCTTCAATCCTCGCGCCGACTACCTGTTGCGCGTGCGCGGCATGAGCATGAAGGACATCGGCATCCTCGACG
GCGACCTGCTGGCCGTCCACGTCACCCGCGAAGCGCGCAACGGCCAGGTGGTGGTCGCGCGGATCGGCGAGGAGGTCACG
GTGAAACGCTTCAAGCGCGAAGGCAGCAAGGTCTGGCTGCTGGCGGAAAACCCTGAGTTCGCTCCGATCGAAGTCGATCT
GAAGGAGCAGGAACTGATCATCGAAGGCTTGAGCGTCGGCGTGATCCGGCGCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(1-65)

Peptidase S24-like (Peptidase_S24)

(83-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02PH1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

38.35

100

0.387