Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   SMQ301_RS07715 Genome accession   NZ_CP011217
Coordinates   1481090..1481821 (-) Length   243 a.a.
NCBI ID   WP_002951673.1    Uniprot ID   A0AAP2RM94
Organism   Streptococcus thermophilus strain SMQ-301     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1476090..1486821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMQ301_RS07690 (SMQ301_1595) - 1477154..1478335 (+) 1182 WP_002951656.1 NAD(P)/FAD-dependent oxidoreductase -
  SMQ301_RS07700 (SMQ301_1596) trmB 1478556..1479197 (-) 642 WP_046206494.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  SMQ301_RS07705 (SMQ301_1597) ccrZ 1479207..1479998 (-) 792 WP_002951667.1 cell cycle regulator CcrZ -
  SMQ301_RS07710 (SMQ301_1598) pptB 1480056..1481090 (-) 1035 WP_412179276.1 ABC transporter permease Regulator
  SMQ301_RS07715 (SMQ301_1599) pptA 1481090..1481821 (-) 732 WP_002951673.1 ABC transporter ATP-binding protein Regulator
  SMQ301_RS07720 (SMQ301_1600) - 1481886..1482305 (+) 420 WP_011681530.1 HIT family protein -
  SMQ301_RS07725 (SMQ301_1601) - 1482302..1482601 (+) 300 WP_011681531.1 hypothetical protein -
  SMQ301_RS07730 (SMQ301_1602) - 1482653..1483330 (-) 678 WP_011681532.1 hypothetical protein -
  SMQ301_RS07735 (SMQ301_1603) - 1483400..1484035 (-) 636 WP_011681533.1 DUF4230 domain-containing protein -
  SMQ301_RS12695 (SMQ301_1604) - 1484054..1484179 (-) 126 WP_011681534.1 hypothetical protein -
  SMQ301_RS07740 (SMQ301_1605) - 1484597..1486696 (-) 2100 WP_046206496.1 ATP-dependent Clp protease ATP-binding subunit -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 26830.05 Da        Isoelectric Point: 4.4606

>NTDB_id=143641 SMQ301_RS07715 WP_002951673.1 1481090..1481821(-) (pptA) [Streptococcus thermophilus strain SMQ-301]
MLKLEKVTGGYANIPVLKDVTFEVADGELVGLIGLNGAGKSTTINEIIGLLTPYGGQIAIDGLTIQQDPASYRQKIGYIP
ETPSLYEELTLREHLETVLMAYGLDVTEGMARADKYLKLFRLDEKLDWFPTQFSKGMKQKVMIICAFIVNPSLFIVDEPF
LGLDPLAISDLIELLAEEKANGKSILMSTHVLDSAEKMCDRFVILHHGQILAQGTIDELRQTFGDSSASLNDIYMQLTKG
ELS

Nucleotide


Download         Length: 732 bp        

>NTDB_id=143641 SMQ301_RS07715 WP_002951673.1 1481090..1481821(-) (pptA) [Streptococcus thermophilus strain SMQ-301]
ATGCTTAAATTAGAAAAGGTGACGGGTGGTTACGCTAATATTCCCGTCCTAAAAGATGTGACTTTTGAGGTGGCTGATGG
TGAATTGGTTGGTCTCATTGGTCTTAATGGTGCTGGAAAATCAACAACAATTAACGAGATTATTGGTCTCTTAACACCCT
ATGGAGGACAGATTGCCATTGATGGGTTAACTATTCAACAAGATCCAGCTAGCTATCGTCAGAAGATTGGCTATATTCCT
GAAACGCCAAGTCTTTATGAAGAATTGACGCTTCGTGAACATTTGGAAACGGTGTTGATGGCCTATGGTCTTGATGTGAC
TGAGGGTATGGCACGTGCGGACAAGTACCTCAAACTCTTTCGCTTAGATGAAAAGTTGGACTGGTTCCCAACTCAGTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCCTTTATTGTGAATCCAAGTCTTTTCATTGTTGATGAGCCCTTT
TTGGGATTGGATCCCTTGGCGATTTCTGATTTGATTGAGCTTCTGGCTGAGGAAAAAGCCAATGGCAAGTCTATTCTCAT
GTCGACTCACGTTTTGGATTCAGCTGAGAAGATGTGTGATCGCTTTGTGATTTTGCACCATGGACAGATCTTGGCACAGG
GGACGATTGATGAGCTTCGTCAGACCTTTGGTGACAGTAGTGCTAGTCTTAACGATATCTATATGCAGTTGACTAAGGGA
GAATTGTCATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus thermophilus LMD-9

100

100

1
  pptA Streptococcus salivarius strain HSISS4

97.119

100

0.971

Multiple sequence alignment