Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   AWH44_RS16100 Genome accession   NZ_CP013952
Coordinates   3113373..3113855 (-) Length   160 a.a.
NCBI ID   WP_001407480.1    Uniprot ID   P52140
Organism   Escherichia coli strain HST04     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3108373..3118855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AWH44_RS16085 (AWH44_15465) ypjF 3112459..3112788 (-) 330 WP_001094400.1 type IV toxin-antitoxin system toxin YpjF -
  AWH44_RS16090 (AWH44_15470) yfjZ 3112809..3113126 (-) 318 WP_000072690.1 type IV toxin-antitoxin system YeeU family antitoxin -
  AWH44_RS16095 ypjJ 3113164..3113364 (-) 201 WP_001395452.1 DUF987 domain-containing protein -
  AWH44_RS16100 (AWH44_15475) radC 3113373..3113855 (-) 483 WP_001407480.1 JAB domain-containing protein Machinery gene
  AWH44_RS16105 (AWH44_15480) lfgA 3113864..3114322 (-) 459 WP_000211841.1 antirestriction protein -
  AWH44_RS16110 - 3114425..3114585 (-) 161 Protein_2933 DUF905 family protein -
  AWH44_RS16115 (AWH44_15485) yfjW 3115220..3116923 (-) 1704 WP_001698958.1 protein YfjW -
  AWH44_RS16120 (AWH44_15490) - 3117059..3118074 (+) 1016 Protein_2935 arsenic transporter -
  AWH44_RS24435 - 3118087..3118239 (+) 153 Protein_2936 glutaredoxin domain-containing protein -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17963.75 Da        Isoelectric Point: 8.6079

>NTDB_id=143333 AWH44_RS16100 WP_001407480.1 3113373..3113855(-) (radC) [Escherichia coli strain HST04]
MMEQSLIPQTPVLPLTAQRTVKRALTLLDRHLRETGVAFTSTQAARDWLKLKMAGLEREEFMMLYLNQQNQLIAHETLFA
GSISSTEVHPREVVKRALYFNAAAVILAHNHPSGDTTPSQADKTITQRLVQALQLVDIRVPDHLIVGGRQIYSFAEHGLL

Nucleotide


Download         Length: 483 bp        

>NTDB_id=143333 AWH44_RS16100 WP_001407480.1 3113373..3113855(-) (radC) [Escherichia coli strain HST04]
ATGATGGAACAGTCACTCATCCCACAGACACCGGTACTTCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCT
GCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCACTCAGGCTGCTCGTGACTGGCTGAAGCTGAAAATGG
CGGGGCTGGAGCGTGAAGAATTTATGATGCTGTATCTGAACCAGCAGAACCAGTTGATTGCCCACGAAACCCTGTTTGCC
GGTTCTATTAGCAGTACCGAGGTACATCCCCGTGAGGTGGTCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGATACT
GGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATAAGACTATAACGCAGCGTCTGGTGCAGGCGCTTC
AGCTCGTTGATATCCGTGTCCCTGACCATCTGATTGTTGGTGGCAGGCAAATCTATTCGTTCGCAGAACACGGTCTGCTT
TGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(40-159)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P52140

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

57.692

65

0.375

Multiple sequence alignment