Detailed information NTG0143329

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AWH44_RS15615
• Genome accession: NZ_CP013952
• Coordinates: 3022690..3023682 (+)
• Length: 330 a.a.
• NCBI ID: WP_085903685.1
• Uniprot ID: -
• Organism: Escherichia coli strain HST04
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3017690..3028682

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AWH44_RS15585 (AWH44_14975)	ispD	3017751..3018461 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
AWH44_RS15590 (AWH44_14980)	ispF	3018461..3018940 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AWH44_RS15595 (AWH44_14985)	truD	3018937..3019986 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
AWH44_RS15600 (AWH44_14990)	surE	3019967..3020728 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
AWH44_RS15605 (AWH44_14995)	pcm	3020722..3021348 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
AWH44_RS15610 (AWH44_15000)	nlpD	3021533..3022627 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
AWH44_RS15615 (AWH44_15005)	rpoS	3022690..3023682 (+)	993	WP_085903685.1	RNA polymerase sigma factor RpoS	Regulator
AWH44_RS15620 (AWH44_15010)	ygbN	3023776..3025140 (-)	1365	WP_000104441.1	GntP family transporter	-
AWH44_RS15625 (AWH44_15015)	ygbM	3025229..3026005 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
AWH44_RS15630 (AWH44_15020)	ygbL	3026010..3026648 (-)	639	WP_001278994.1	aldolase	-
AWH44_RS15635 (AWH44_15025)	otnK	3026740..3027906 (-)	1167	WP_001393459.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37902.75 Da
• Isoelectric Point: 4.5499

>NTDB_id=143329 AWH44_RS15615 WP_085903685.1 3022690..3023682(+) (rpoS) [Escherichia coli strain HST04]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
SRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=143329 AWH44_RS15615 WP_085903685.1 3022690..3023682(+) (rpoS) [Escherichia coli strain HST04]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAACAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
AGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	72.755	97.879	0.712