Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   AVT04_RS08775 Genome accession   NZ_CP013939
Coordinates   1657630..1659300 (+) Length   556 a.a.
NCBI ID   WP_011227293.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain S9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1652630..1664300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVT04_RS08745 (AVT04_08745) - 1653529..1653774 (+) 246 WP_011227295.1 hypothetical protein -
  AVT04_RS08750 (AVT04_08750) xseA 1653963..1655303 (+) 1341 WP_011227294.1 exodeoxyribonuclease VII large subunit -
  AVT04_RS08755 (AVT04_08755) - 1655281..1655496 (+) 216 WP_002951008.1 exodeoxyribonuclease VII small subunit -
  AVT04_RS08760 (AVT04_08760) - 1655496..1656368 (+) 873 WP_011226128.1 polyprenyl synthetase family protein -
  AVT04_RS08765 (AVT04_08765) - 1656361..1657227 (+) 867 WP_011226127.1 TlyA family RNA methyltransferase -
  AVT04_RS08770 (AVT04_08770) - 1657175..1657621 (+) 447 WP_011226126.1 arginine repressor -
  AVT04_RS08775 (AVT04_08775) recN 1657630..1659300 (+) 1671 WP_011227293.1 DNA repair protein RecN Machinery gene
  AVT04_RS08780 (AVT04_08780) - 1659371..1660207 (+) 837 WP_011226124.1 DegV family protein -
  AVT04_RS08785 (AVT04_08785) - 1660200..1661075 (+) 876 WP_041827053.1 SGNH/GDSL hydrolase family protein -
  AVT04_RS08790 (AVT04_08790) - 1661068..1661637 (+) 570 WP_011226122.1 YpmS family protein -
  AVT04_RS08795 (AVT04_08795) - 1661774..1662049 (+) 276 WP_002950996.1 HU family DNA-binding protein -
  AVT04_RS08800 (AVT04_08800) - 1662108..1662308 (+) 201 WP_002950995.1 hypothetical protein -
  AVT04_RS08805 (AVT04_08805) - 1662373..1663311 (-) 939 WP_002950994.1 dihydroorotate oxidase -

Sequence

Protein


Download         Length: 556 a.a.        Molecular weight: 62500.65 Da        Isoelectric Point: 4.5240

>NTDB_id=143267 AVT04_RS08775 WP_011227293.1 1657630..1659300(+) (recN) [Streptococcus thermophilus strain S9]
MLLEITIKNFAIIEEISLNFENGMTVLTGETGAGKSIIIDAMNLMLGARASSEVVRHSAPKAEIQGFFSIEQNPALVSLL
EDNGIPVEDELIIRREIFQNGRSVSRINGQMVNLTILKAVGNFLVDIHGQHDQEELMRPALHINMLDAFGDKDFFQAKKE
YQEYFDRYRELRKAVLEKQKNEKEHKARIEMLAFQIAEIEAASLKTGEDLALMKERDKLLNHKQIADTLTNAYVMLDNED
FSSLSNVRSAMNDLQSLEEYDSDYKELSNNLSEAYYVLEDVTKQLGDLVDNLDFDAGRLQEIEYRLDTINAITRKYGGTV
DDVLDYLENSSKEYNLLTGNSSSSDAMEQELKQLEKDLLASAETLQRERHQIANALESEIKTELCDLYMDKADFKVVFTK
GKFNRDGNEQVEFYISTNPGEGFKPLVKVASGGELSRLMLAIKSAFARKEDKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
SHGQVLAISHLPQVIAIADYQFFISKESDNETTVSRVRLLTPEERVEEIAKMLAGDNLTDAALSQARALLKVDEPV

Nucleotide


Download         Length: 1671 bp        

>NTDB_id=143267 AVT04_RS08775 WP_011227293.1 1657630..1659300(+) (recN) [Streptococcus thermophilus strain S9]
ATGCTTCTCGAAATTACGATAAAGAATTTCGCAATTATTGAAGAAATTTCTCTTAACTTTGAAAATGGGATGACTGTTCT
TACCGGAGAGACTGGGGCAGGAAAATCCATTATCATTGATGCCATGAATCTTATGTTGGGGGCACGGGCATCTAGCGAAG
TTGTCCGTCATTCAGCCCCCAAGGCGGAGATTCAGGGCTTCTTTTCAATTGAACAAAATCCTGCTTTAGTTAGTCTCTTG
GAAGACAATGGGATTCCTGTTGAAGATGAGTTAATTATCCGCCGTGAAATTTTCCAAAATGGTCGAAGTGTTAGCCGTAT
CAACGGTCAAATGGTCAATTTAACGATTCTTAAAGCTGTCGGCAACTTTTTGGTAGATATCCATGGACAGCATGACCAAG
AAGAACTTATGAGACCTGCTCTTCACATAAACATGCTTGATGCCTTTGGTGACAAGGATTTTTTTCAGGCAAAAAAAGAA
TATCAGGAATACTTTGATCGTTACCGTGAGCTAAGAAAAGCTGTTCTTGAAAAACAGAAAAACGAGAAAGAGCATAAGGC
TAGAATTGAAATGCTAGCTTTTCAGATTGCAGAAATTGAAGCAGCCTCTCTAAAAACAGGTGAGGATCTAGCTTTGATGA
AGGAGCGAGATAAACTCCTCAATCATAAGCAGATTGCTGATACCTTAACGAATGCTTATGTTATGCTGGATAATGAAGAT
TTTTCAAGCTTATCAAATGTCCGTTCTGCCATGAATGATCTCCAATCTCTTGAAGAGTATGATTCTGATTATAAAGAACT
CTCTAATAATTTGTCAGAAGCCTACTATGTCCTTGAGGATGTCACTAAACAGTTAGGAGATCTTGTAGATAATTTAGATT
TTGATGCTGGTCGTTTGCAAGAGATTGAATACCGTTTAGATACGATTAATGCCATTACCCGTAAATATGGTGGAACTGTT
GATGATGTCTTAGATTATCTCGAAAATTCAAGTAAAGAATATAACCTATTGACTGGAAATTCTAGCTCTTCTGATGCTAT
GGAACAAGAGCTTAAGCAACTTGAAAAAGACTTACTCGCGTCTGCAGAAACCTTGCAAAGGGAACGACATCAGATTGCAA
ACGCTCTTGAGTCAGAGATAAAGACTGAGTTATGTGATCTGTATATGGATAAGGCTGATTTTAAAGTTGTCTTTACTAAG
GGGAAATTTAACCGTGATGGTAATGAGCAAGTTGAGTTTTATATTTCAACCAATCCAGGTGAAGGATTTAAACCGCTTGT
TAAGGTTGCATCTGGTGGCGAACTGTCTCGACTTATGCTAGCCATTAAGTCAGCCTTTGCTCGAAAAGAAGATAAAACTA
GTATTGTCTTTGATGAGGTTGATACTGGAGTGTCGGGCCGCGTAGCCCAGGCTATCGCACAAAAGATTCATAAGATTGGA
AGTCATGGTCAGGTATTGGCTATCAGTCACCTTCCTCAAGTAATCGCTATTGCAGATTATCAATTCTTTATTTCTAAAGA
AAGTGATAACGAGACAACTGTATCTCGTGTTCGTCTCCTAACACCTGAAGAAAGAGTTGAGGAAATCGCCAAGATGCTTG
CAGGTGATAATTTGACTGATGCTGCCTTGAGTCAAGCTAGAGCTTTATTAAAAGTGGATGAACCTGTTTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

44.014

100

0.45