Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   AVT04_RS08200 Genome accession   NZ_CP013939
Coordinates   1541629..1542309 (+) Length   226 a.a.
NCBI ID   WP_003094822.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain S9     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1536629..1547309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVT04_RS10165 - 1537693..1539263 (+) 1571 WP_155561944.1 IS3-like element ISSth1b family transposase -
  AVT04_RS11295 (AVT04_08185) - 1539328..1540107 (-) 780 WP_416153328.1 solute carrier family 23 protein -
  AVT04_RS11300 (AVT04_08190) - 1540038..1540598 (-) 561 WP_011227356.1 solute carrier family 23 protein -
  AVT04_RS08195 (AVT04_08195) - 1540598..1541178 (-) 581 Protein_1519 xanthine phosphoribosyltransferase -
  AVT04_RS08200 (AVT04_08200) braR 1541629..1542309 (+) 681 WP_003094822.1 response regulator transcription factor Regulator
  AVT04_RS08205 (AVT04_08205) - 1542299..1543273 (+) 975 WP_101361257.1 sensor histidine kinase -
  AVT04_RS08210 (AVT04_08210) - 1543418..1544176 (+) 759 WP_011227353.1 ABC transporter ATP-binding protein -
  AVT04_RS08215 (AVT04_08215) - 1544178..1546178 (+) 2001 WP_059257417.1 ABC transporter permease -
  AVT04_RS08220 (AVT04_08220) - 1546263..1546460 (+) 198 Protein_1524 YkgJ family cysteine cluster protein -
  AVT04_RS10460 - 1546462..1546641 (+) 180 Protein_1525 ABC transporter permease -
  AVT04_RS08225 (AVT04_08225) - 1546652..1547101 (+) 450 WP_011227350.1 cytidine deaminase family protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 26122.50 Da        Isoelectric Point: 5.0092

>NTDB_id=143263 AVT04_RS08200 WP_003094822.1 1541629..1542309(+) (braR) [Streptococcus thermophilus strain S9]
MHKILLVEDDEVIRQQVKKMLEQWGYEVVLVEDFMEVLSIFVKVEPHLVLMDIGLPLFNGYHWCQEIRKVSKVPIMFLSS
RDQAMDIVMAINMGGDDFVTKPFDQNVLLAKIQGLLRRSYEFGKDQSLLEYMGVILNLKAMDLVYQGEVVSLTKNEFQIL
QVLFERSGNIVSREDLMKELWNSDFFIDDNTLSVNVARLRKKLEAVGLKDFIETKKGVGYGLRHDG

Nucleotide


Download         Length: 681 bp        

>NTDB_id=143263 AVT04_RS08200 WP_003094822.1 1541629..1542309(+) (braR) [Streptococcus thermophilus strain S9]
ATGCATAAGATTTTATTAGTTGAGGACGACGAGGTTATCCGTCAACAAGTCAAAAAAATGCTAGAACAGTGGGGTTACGA
AGTTGTTCTTGTTGAAGATTTCATGGAAGTATTATCTATTTTTGTAAAAGTAGAGCCCCACTTGGTTCTTATGGACATTG
GTTTACCTCTATTTAATGGTTATCATTGGTGTCAGGAAATTCGTAAGGTCTCCAAGGTGCCTATTATGTTCTTGTCTTCC
AGAGATCAGGCCATGGATATCGTTATGGCAATCAATATGGGTGGGGACGACTTTGTGACTAAACCCTTTGACCAAAATGT
TCTCTTGGCAAAAATTCAAGGGCTTTTGCGCCGATCTTATGAGTTTGGAAAGGATCAGAGTCTTTTGGAATATATGGGTG
TGATTCTGAACCTTAAGGCCATGGATCTGGTTTATCAGGGAGAAGTCGTTTCTTTGACTAAGAATGAATTTCAGATTTTA
CAAGTTCTCTTCGAGCGTTCTGGTAATATCGTTAGTCGTGAAGACCTCATGAAGGAGCTTTGGAATAGTGACTTCTTTAT
TGATGATAACACTCTCTCTGTAAATGTGGCACGTTTACGTAAGAAGTTAGAGGCAGTTGGTTTGAAGGACTTTATTGAAA
CCAAGAAAGGTGTCGGTTACGGGTTGCGTCATGATGGATAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-221)

Response regulator receiver domain (Response_reg)

(4-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

52.294

96.46

0.504