Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   AVT04_RS04770 Genome accession   NZ_CP013939
Coordinates   900061..900834 (-) Length   257 a.a.
NCBI ID   WP_002946256.1    Uniprot ID   Q5M6K1
Organism   Streptococcus thermophilus strain S9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 895061..905834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVT04_RS04755 (AVT04_04755) purC 897604..898311 (-) 708 WP_011226729.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  AVT04_RS04760 (AVT04_04760) - 898596..898841 (-) 246 WP_002949008.1 phosphopantetheine-binding protein -
  AVT04_RS04765 (AVT04_04765) plsX 898841..899845 (-) 1005 WP_011225258.1 phosphate acyltransferase PlsX -
  AVT04_RS04770 (AVT04_04770) recO 900061..900834 (-) 774 WP_002946256.1 DNA repair protein RecO Machinery gene
  AVT04_RS04775 (AVT04_04775) - 900821..901996 (-) 1176 WP_014607821.1 pyridoxal phosphate-dependent aminotransferase -
  AVT04_RS09900 - 902209..903055 (+) 847 Protein_888 transposase -
  AVT04_RS04790 (AVT04_04790) - 903104..904069 (-) 966 WP_059257371.1 ribose-phosphate diphosphokinase -
  AVT04_RS04795 (AVT04_04795) - 904283..905683 (-) 1401 WP_059257372.1 CHAP domain-containing protein -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 29830.05 Da        Isoelectric Point: 5.0766

>NTDB_id=143218 AVT04_RS04770 WP_002946256.1 900061..900834(-) (recO) [Streptococcus thermophilus strain S9]
MQKLESRGFILFNRNYRENDKLVKIFTKQAGKRMFFVRGGGSGKLSAVIQPLNIAEFMMTVNDEGLSFIEDYSQAESFKE
ITSDIFKLSYATYLAALTDAAIADGVVDAQLFAFLEKTLVLMEEGLDYEILTNIFEIQVLDRFGVRLNFHECVFCHRVGL
PFDFSYKFSGLLCPNHYEEDERRSHLDPNVPYLLDRFQGLSFEELRSISVKDEMKRKLRQFIDELYDNYVGIHLKSKKFI
DNLNSWGHIMSKEDNAD

Nucleotide


Download         Length: 774 bp        

>NTDB_id=143218 AVT04_RS04770 WP_002946256.1 900061..900834(-) (recO) [Streptococcus thermophilus strain S9]
ATGCAGAAGCTTGAGAGTAGGGGGTTTATCCTCTTCAATCGTAATTATCGTGAGAATGATAAGCTGGTTAAGATTTTTAC
TAAACAAGCTGGTAAACGGATGTTTTTTGTTAGAGGTGGTGGGTCAGGTAAATTGAGTGCTGTGATTCAACCTTTAAACA
TCGCTGAATTTATGATGACTGTAAATGATGAAGGTTTATCTTTCATAGAGGATTATAGTCAGGCAGAGTCTTTTAAGGAA
ATTACAAGTGATATTTTTAAACTGTCTTACGCGACCTATTTAGCTGCCTTGACTGATGCTGCTATTGCTGACGGTGTGGT
AGATGCACAATTATTTGCATTTTTAGAGAAAACCCTTGTGTTAATGGAAGAGGGCTTAGATTATGAAATATTGACTAATA
TCTTTGAGATTCAAGTTTTGGACCGTTTTGGCGTACGATTGAATTTCCATGAATGTGTCTTTTGTCATCGTGTTGGTCTT
CCTTTTGATTTCTCGTATAAGTTCTCAGGTTTACTTTGTCCCAATCATTACGAAGAAGATGAAAGGCGTAGTCATTTGGA
CCCTAATGTGCCTTATCTTTTGGATCGTTTCCAGGGTCTTTCGTTTGAAGAATTGAGAAGCATATCTGTTAAGGATGAAA
TGAAACGAAAGTTGAGACAATTTATTGATGAGCTTTATGATAATTATGTTGGGATTCATCTTAAAAGCAAGAAGTTTATT
GATAATCTAAATTCTTGGGGTCATATTATGAGTAAAGAAGATAATGCTGATTAA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(83-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M6K1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

61.66

98.444

0.607

Multiple sequence alignment