Detailed information    

insolico Bioinformatically predicted

Overview

Name   yaaT   Type   Regulator
Locus tag   AVT04_RS02445 Genome accession   NZ_CP013939
Coordinates   463030..463836 (-) Length   268 a.a.
NCBI ID   WP_011680838.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain S9     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 458030..468836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVT04_RS10340 - 458042..458513 (+) 472 Protein_469 YgjV family protein -
  AVT04_RS02415 (AVT04_02415) - 458532..459353 (-) 822 WP_022096938.1 Cof-type HAD-IIB family hydrolase -
  AVT04_RS02420 (AVT04_02420) - 459376..460032 (-) 657 WP_011225604.1 glycoside hydrolase family 73 protein -
  AVT04_RS02425 (AVT04_02425) - 460130..460471 (-) 342 WP_041826978.1 P-II family nitrogen regulator -
  AVT04_RS02430 (AVT04_02430) - 460482..461717 (-) 1236 WP_041826977.1 ammonium transporter -
  AVT04_RS02435 (AVT04_02435) rsmI 461854..462720 (-) 867 WP_002949974.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  AVT04_RS02440 (AVT04_02440) yabA 462723..463043 (-) 321 WP_002946304.1 DNA replication initiation control protein YabA -
  AVT04_RS02445 (AVT04_02445) yaaT 463030..463836 (-) 807 WP_011680838.1 regulatory iron-sulfur-containing complex subunit RicT Regulator
  AVT04_RS02450 (AVT04_02450) - 463833..464708 (-) 876 WP_011225600.1 DNA polymerase III subunit delta' -
  AVT04_RS02455 (AVT04_02455) tmk 464717..465346 (-) 630 WP_002946312.1 dTMP kinase -
  AVT04_RS02460 (AVT04_02460) tpiA 465584..466342 (-) 759 WP_002946314.1 triose-phosphate isomerase -
  AVT04_RS02465 (AVT04_02465) tuf 466591..467787 (-) 1197 WP_002949971.1 elongation factor Tu -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 29758.16 Da        Isoelectric Point: 4.5847

>NTDB_id=143188 AVT04_RS02445 WP_011680838.1 463030..463836(-) (yaaT) [Streptococcus thermophilus strain S9]
MTEVIGIKFEENGAVEYVVPDKNYTKGDFVVVLEKKDKRLAQVVMENTVFPEVSLPVDLNRVEGLASERDFARYDENLLK
AEQSMGVVADLIAQNQLDMKVVDIVFPLNSSYVLISFVAEKRVDFRQLLEDLAAYFKTRIELRQISSREESKIYGGLGPC
GRALCCSSFLGEFPPVSIKMAKNQSLSLNSGKMNGVCGRLMCCLSYEDDFYRDSKASYPDLGEEIETKEGRGQVIAIDVI
AGTVKVMFEKGGAPLTYGVEEVQLNGKA

Nucleotide


Download         Length: 807 bp        

>NTDB_id=143188 AVT04_RS02445 WP_011680838.1 463030..463836(-) (yaaT) [Streptococcus thermophilus strain S9]
ATGACAGAAGTCATTGGAATCAAATTTGAAGAAAATGGAGCGGTAGAATACGTTGTTCCTGATAAAAATTACACCAAAGG
TGACTTTGTAGTCGTTTTGGAGAAAAAAGATAAGCGTTTAGCCCAGGTTGTTATGGAAAATACTGTTTTTCCAGAGGTTA
GTTTACCTGTGGATTTGAATCGGGTCGAAGGCTTGGCTAGTGAGAGAGATTTCGCTAGATATGATGAAAATCTTTTAAAG
GCTGAACAGAGTATGGGAGTAGTGGCTGATTTAATTGCTCAAAATCAGCTAGATATGAAAGTGGTGGACATAGTCTTTCC
TCTAAATAGCTCTTATGTGCTTATCAGTTTCGTGGCTGAAAAGCGGGTAGATTTTCGTCAATTGCTCGAGGATTTGGCGG
CTTATTTTAAGACGCGAATTGAGTTACGTCAAATTTCCAGTCGTGAGGAATCAAAAATTTATGGTGGTTTAGGTCCTTGT
GGACGTGCACTGTGTTGTTCTAGTTTTTTGGGCGAATTCCCACCGGTATCGATTAAGATGGCTAAAAATCAAAGTTTGTC
CTTGAATTCTGGTAAGATGAACGGTGTCTGTGGACGTCTCATGTGTTGTCTCAGTTATGAAGATGATTTTTACCGAGACA
GTAAGGCTAGTTATCCTGACTTGGGTGAAGAGATTGAGACCAAGGAAGGTAGAGGTCAAGTCATTGCTATTGATGTGATT
GCAGGGACTGTTAAAGTTATGTTTGAAAAAGGGGGAGCTCCCCTAACTTATGGAGTGGAGGAAGTTCAGCTAAATGGAAA
AGCGTGA

Domains

Predicted by InterProScan.

PSP1 C-terminal conserved region (PSP1)

(61-145)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  yaaT Bacillus subtilis subsp. subtilis str. 168

42.205

98.134

0.414