Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   AVT04_RS00140 Genome accession   NZ_CP013939
Coordinates   27435..28505 (+) Length   356 a.a.
NCBI ID   WP_011227204.1    Uniprot ID   Q5LZT9
Organism   Streptococcus thermophilus strain S9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 22435..33505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVT04_RS00120 (AVT04_00120) glgP 22617..24881 (+) 2265 WP_011227206.1 glycogen/starch/alpha-glucan family phosphorylase -
  AVT04_RS09505 - 24987..25415 (-) 429 WP_011225976.1 hypothetical protein -
  AVT04_RS00130 (AVT04_00130) - 25484..26038 (-) 555 WP_011227205.1 hypothetical protein -
  AVT04_RS00135 (AVT04_00135) - 26221..27210 (+) 990 WP_002950753.1 lipoate--protein ligase -
  AVT04_RS00140 (AVT04_00140) xerS 27435..28505 (+) 1071 WP_011227204.1 tyrosine recombinase XerS Machinery gene
  AVT04_RS00145 (AVT04_00145) - 28667..31207 (-) 2541 WP_011225973.1 M1 family metallopeptidase -
  AVT04_RS00150 (AVT04_00150) phoU 31341..31994 (-) 654 WP_041827032.1 phosphate signaling complex protein PhoU -
  AVT04_RS00155 (AVT04_00155) pstB 32022..32780 (-) 759 WP_011225971.1 phosphate ABC transporter ATP-binding protein PstB -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41544.66 Da        Isoelectric Point: 9.7410

>NTDB_id=143174 AVT04_RS00140 WP_011227204.1 27435..28505(+) (xerS) [Streptococcus thermophilus strain S9]
MKRELLLEKIEEYKSLMPWFVLEYYQSKLSVPYSFTTLYEYLKEYKRFFNWLIDSGISDADDIASIHIKTLENLTKKDME
SFVLYLRERPSLNTYSKKQGVSQTTINRTLSALSSLYKYLTEEVEGPDGEPYFYRNVMKKISTKKKKETLAARAENIKQK
LFLGDETMKFLDYVENEYEVKLSNRAKSSFYKNKERDLAIIALLLSSGVRLSEAVNLDLKDINLKRMVIDVTRKGGQRDS
VNMASFARPYLENYLSIRNKRYKAEKQDVALFLTEYRGVPNRIDASSIEKMVAKYSQDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=143174 AVT04_RS00140 WP_011227204.1 27435..28505(+) (xerS) [Streptococcus thermophilus strain S9]
ATGAAACGTGAACTCTTACTAGAAAAAATTGAAGAATACAAATCTCTTATGCCTTGGTTTGTTTTGGAGTATTATCAATC
TAAACTATCGGTACCGTATTCTTTCACGACCTTATATGAATATCTCAAGGAATATAAACGCTTTTTTAACTGGTTAATTG
ACTCAGGTATTTCAGATGCTGATGATATTGCCTCAATTCATATCAAAACCTTGGAGAATCTAACTAAAAAAGATATGGAA
TCGTTTGTCCTCTATCTACGTGAACGTCCATCTTTAAATACCTATTCAAAGAAACAGGGTGTCTCTCAAACAACCATTAA
TCGTACGCTTTCAGCTCTATCTAGTCTCTATAAGTATTTAACTGAGGAGGTCGAGGGACCTGATGGTGAACCATATTTCT
ATCGTAACGTCATGAAAAAAATTTCGACTAAGAAAAAGAAAGAGACCTTGGCTGCACGTGCTGAGAATATCAAACAAAAA
CTTTTTCTAGGCGATGAAACCATGAAGTTCCTTGATTATGTAGAAAATGAATACGAAGTCAAGCTCTCAAATCGTGCGAA
ATCTTCGTTTTATAAGAATAAAGAGCGAGATTTAGCCATCATTGCCCTACTGCTGTCTTCAGGCGTTCGACTCTCTGAGG
CTGTAAATCTGGACCTTAAAGATATTAATTTAAAAAGGATGGTTATTGACGTTACTCGAAAAGGTGGTCAACGGGACTCG
GTTAATATGGCGAGTTTTGCAAGACCCTATCTTGAAAACTATCTTAGCATACGTAATAAACGCTATAAGGCTGAAAAGCA
AGATGTTGCTCTATTTTTAACAGAATATCGAGGCGTTCCCAACCGTATTGATGCTTCAAGTATCGAAAAAATGGTTGCTA
AGTATTCTCAGGATTTCAAGATTCGTGTCACTCCCCACAAACTACGTCATACTTTGGCAACACGTCTTTATGATGCTACT
AAGTCTCAAGTTTTAGTTAGTCATCAACTTGGTCATGCTTCCACTCAGGTCACTGATCTTTACACCCATATTGTAAATGA
TGAGCAAAAAAATGCTCTAGATAATTTATAA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)

Phage integrase family (Phage_integrase)

(182-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5LZT9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

82.303

100

0.823