Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   TP37_RS05410 Genome accession   NZ_CP011160
Coordinates   1221391..1221831 (+) Length   146 a.a.
NCBI ID   WP_005934296.1    Uniprot ID   -
Organism   Xanthomonas citri pv. aurantifolii strain FDC 1559     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1216391..1226831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TP37_RS24915 - 1216538..1217818 (-) 1281 WP_197730847.1 RHS repeat protein -
  TP37_RS05395 (TP37_05290) coaE 1218313..1218924 (-) 612 WP_007973907.1 dephospho-CoA kinase -
  TP37_RS05400 (TP37_05295) - 1218938..1219801 (-) 864 WP_003491180.1 A24 family peptidase -
  TP37_RS05405 (TP37_05300) pilC 1219808..1221064 (-) 1257 WP_007973903.1 type II secretion system F family protein Machinery gene
  TP37_RS05410 (TP37_05305) pilE 1221391..1221831 (+) 441 WP_005934296.1 pilin Machinery gene
  TP37_RS05415 (TP37_05310) - 1221940..1222341 (+) 402 WP_046121195.1 pilin -
  TP37_RS05420 (TP37_05315) pilB 1222404..1224140 (+) 1737 WP_022558667.1 type IV-A pilus assembly ATPase PilB Machinery gene
  TP37_RS05425 - 1224237..1224383 (+) 147 WP_082336538.1 serine/threonine protein kinase -
  TP37_RS05430 (TP37_05320) pilR 1224590..1226044 (-) 1455 WP_042806014.1 sigma-54 dependent transcriptional regulator Regulator

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 14934.04 Da        Isoelectric Point: 9.0090

>NTDB_id=143034 TP37_RS05410 WP_005934296.1 1221391..1221831(+) (pilE) [Xanthomonas citri pv. aurantifolii strain FDC 1559]
MKKQNGFTLIELMIVVAIIAILAAIALPAYQDYLARSQVSEGLSLASGAKTAVAETYANTGAFPANNAAAGLETAANIKG
KYITSVTVSSGGVITALFNSSNAKLSGKNLVLTPTDNNGSISWGCSTGTTIDQKYLPTSCRTAATP

Nucleotide


Download         Length: 441 bp        

>NTDB_id=143034 TP37_RS05410 WP_005934296.1 1221391..1221831(+) (pilE) [Xanthomonas citri pv. aurantifolii strain FDC 1559]
ATGAAGAAGCAAAACGGTTTTACGTTGATCGAACTCATGATCGTGGTCGCGATCATTGCGATCCTGGCTGCAATTGCTCT
TCCGGCTTATCAGGACTACCTTGCGCGTTCGCAGGTTTCTGAAGGTCTGTCGCTGGCATCGGGTGCAAAGACCGCAGTTG
CTGAGACGTATGCCAACACTGGTGCATTTCCGGCCAACAACGCAGCGGCCGGTCTTGAGACTGCGGCAAACATCAAGGGT
AAGTACATCACCTCGGTGACCGTTAGCTCGGGTGGCGTCATCACTGCGCTGTTTAATAGCTCCAATGCGAAGCTGAGTGG
TAAGAACCTCGTCCTGACTCCGACGGACAACAACGGGTCGATTAGCTGGGGCTGCAGCACTGGCACCACCATCGATCAGA
AGTATCTGCCTACCTCTTGCCGTACTGCGGCTACCCCGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Pilin (bacterial filament) (Pilin)

(35-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

48.75

100

0.534
  pilE Neisseria gonorrhoeae strain FA1090

47.742

100

0.507
  pilA2 Legionella pneumophila str. Paris

50.714

95.89

0.486
  pilA2 Legionella pneumophila strain ERS1305867

50

95.89

0.479
  pilA/pilA1 Eikenella corrodens VA1

45.161

100

0.479
  comP Acinetobacter baylyi ADP1

46

100

0.473
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

35.87

100

0.452
  pilA Ralstonia pseudosolanacearum GMI1000

38.415

100

0.432
  pilA Acinetobacter baumannii strain A118

42.282

100

0.432
  pilA Vibrio cholerae strain A1552

39.474

100

0.411
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

39.474

100

0.411
  pilA Vibrio cholerae C6706

39.474

100

0.411
  pilA Pseudomonas aeruginosa PAK

38.816

100

0.404
  pilA Vibrio campbellii strain DS40M4

37.584

100

0.384
  pilA/pilAI Pseudomonas stutzeri DSM 10701

38.849

95.205

0.37

Multiple sequence alignment