Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   WR52_RS25870 Genome accession   NZ_CP011155
Coordinates   5091333..5092682 (-) Length   449 a.a.
NCBI ID   WP_063538074.1    Uniprot ID   -
Organism   Bacillus cereus strain HN001     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5086333..5097682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WR52_RS25835 (WR52_26445) - 5086499..5087194 (-) 696 WP_063538068.1 hypothetical protein -
  WR52_RS25840 (WR52_26450) - 5087181..5087969 (-) 789 WP_063538070.1 hypothetical protein -
  WR52_RS25845 (WR52_26455) - 5088001..5088569 (-) 569 Protein_5127 hypothetical protein -
  WR52_RS25850 (WR52_26460) - 5088687..5089169 (-) 483 WP_000023374.1 hypothetical protein -
  WR52_RS25855 (WR52_26465) raiA 5089440..5089982 (-) 543 WP_000671185.1 ribosome-associated translation inhibitor RaiA -
  WR52_RS25860 (WR52_26470) cspC 5090305..5090502 (-) 198 WP_003303412.1 cold shock protein CspC -
  WR52_RS25865 (WR52_26475) - 5090629..5091333 (-) 705 WP_080470839.1 ComF family protein -
  WR52_RS25870 (WR52_26480) comFA 5091333..5092682 (-) 1350 WP_063538074.1 ATP-dependent helicase ComFA Machinery gene
  WR52_RS25875 (WR52_26485) - 5092810..5094222 (-) 1413 WP_063538076.1 C40 family peptidase -
  WR52_RS25880 (WR52_26490) - 5094371..5094685 (-) 315 WP_000400857.1 helix-turn-helix domain-containing protein -
  WR52_RS25885 (WR52_26495) - 5094858..5095700 (-) 843 WP_025921785.1 DegV family protein -
  WR52_RS25890 (WR52_26500) - 5095936..5096571 (+) 636 WP_063538078.1 YigZ family protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 51191.09 Da        Isoelectric Point: 9.8253

>NTDB_id=143010 WR52_RS25870 WP_063538074.1 5091333..5092682(-) (comFA) [Bacillus cereus strain HN001]
MLAGKQLLLEEISSDLQRELNDLKKKGEVICVQGVKKKNSKYMCQRCGNVDWRLFASFLCKRCSKVCTYCRKCITMGRVS
ECAVLVRGIAERKREKNLNLLQWNGTLSAGQDLAAQGVIEAIRQKESFFIWAVCGAGKTEMLFYGINEALQKGERVCIAT
PRTDVVLELAPRLQEVFPDIKVAALYGGSVDKEKDAVLVVATTHQLLRYYRAFHVMVVDEIDAFPYCVDQMLQYAVKQAM
KERAARIYLTATPDETWKRKFRKGEQKGVIVSGRYHRHPLPVPLFCWCGNWKKSLIHKRIPRVLLQWLKMYLNKKYPVFL
FVPHVRYIEEISSLLKSLHNKVEGVHAEDPMRKEKVAAFRKGEIPLLVTTTILERGVTVKNLQVAVLGAEEEIFSESALV
QIAGRAGRSFEAPYGEVIYFHYGKTEAMVRAKKHIQGMNKNAKEQGLID

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=143010 WR52_RS25870 WP_063538074.1 5091333..5092682(-) (comFA) [Bacillus cereus strain HN001]
ATGCTAGCGGGGAAACAGTTGCTATTAGAAGAAATTTCTTCAGATTTACAGAGGGAATTAAATGATTTGAAAAAGAAGGG
AGAGGTCATATGTGTACAAGGTGTAAAAAAGAAGAATTCTAAATATATGTGCCAACGCTGCGGAAATGTAGATTGGCGGC
TATTTGCGTCGTTTTTATGTAAAAGGTGCAGTAAAGTGTGCACATATTGCCGGAAGTGTATAACGATGGGGAGGGTAAGT
GAATGTGCTGTACTTGTTCGAGGGATTGCTGAAAGAAAGAGAGAAAAGAATTTAAACTTGTTACAGTGGAACGGGACGTT
GTCTGCTGGACAAGATTTAGCGGCGCAAGGAGTTATAGAGGCTATTAGGCAAAAAGAATCCTTTTTTATTTGGGCTGTAT
GCGGGGCTGGGAAAACAGAGATGTTGTTCTACGGTATTAACGAAGCGCTTCAAAAGGGGGAAAGAGTTTGTATCGCAACG
CCGAGAACGGATGTTGTTCTAGAATTAGCACCGAGATTGCAAGAAGTATTTCCAGATATAAAGGTAGCGGCTTTATATGG
AGGGAGTGTGGATAAAGAAAAAGATGCAGTACTAGTCGTTGCGACTACGCATCAGTTATTACGTTATTATAGGGCATTTC
ATGTCATGGTTGTAGATGAGATAGATGCTTTTCCATATTGTGTAGATCAAATGTTACAGTACGCGGTAAAACAAGCGATG
AAAGAAAGAGCGGCGCGTATTTATTTAACTGCCACTCCAGATGAAACGTGGAAGCGAAAATTTAGAAAAGGTGAACAAAA
AGGTGTTATTGTTTCTGGACGATATCATCGTCATCCTTTGCCAGTTCCTTTATTTTGTTGGTGCGGGAATTGGAAAAAAA
GCCTCATTCATAAAAGAATTCCTCGAGTTTTACTACAATGGTTAAAGATGTACTTAAACAAAAAGTATCCTGTTTTTTTA
TTCGTTCCCCATGTACGATATATAGAAGAAATAAGCTCGTTATTGAAATCATTGCATAATAAAGTTGAAGGTGTACATGC
AGAAGATCCGATGAGAAAAGAGAAAGTCGCAGCGTTCAGAAAGGGAGAAATCCCATTATTAGTTACAACGACAATTTTAG
AGCGAGGCGTAACGGTGAAAAATTTGCAAGTTGCAGTTTTAGGGGCGGAAGAAGAAATATTTTCAGAAAGTGCGCTCGTA
CAAATTGCGGGCCGAGCAGGGCGGAGCTTTGAAGCACCGTATGGAGAGGTCATTTATTTTCACTATGGCAAGACAGAGGC
GATGGTGCGCGCGAAAAAACATATTCAAGGTATGAATAAGAATGCGAAAGAACAAGGGTTGATTGATTAA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(313-408)

Type III restriction enzyme, res subunit (ResIII)

(108-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

50.679

98.441

0.499

Multiple sequence alignment