Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   WR52_RS20120 Genome accession   NZ_CP011155
Coordinates   4019604..4020062 (+) Length   152 a.a.
NCBI ID   WP_000804864.1    Uniprot ID   -
Organism   Bacillus cereus strain HN001     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 4014604..4025062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WR52_RS20105 (WR52_20570) - 4015273..4015509 (+) 237 WP_000283738.1 hypothetical protein -
  WR52_RS20110 (WR52_20575) - 4015671..4017779 (-) 2109 WP_063537298.1 polyphosphate kinase -
  WR52_RS20115 (WR52_20580) - 4017888..4019462 (-) 1575 WP_063537300.1 Ppx/GppA family phosphatase -
  WR52_RS20120 (WR52_20585) kre 4019604..4020062 (+) 459 WP_000804864.1 YkyB family protein Regulator
  WR52_RS20125 (WR52_20590) - 4020094..4020756 (-) 663 WP_000922498.1 YkyA family protein -
  WR52_RS20130 (WR52_20595) - 4021371..4022024 (-) 654 WP_063537302.1 diguanylate cyclase -
  WR52_RS20135 (WR52_20600) - 4022188..4022421 (+) 234 WP_063537304.1 SPP1 phage holin family protein -
  WR52_RS20140 (WR52_20605) - 4022453..4022953 (-) 501 WP_000708119.1 hypothetical protein -
  WR52_RS20145 (WR52_20610) - 4023365..4024906 (+) 1542 WP_000449912.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17757.49 Da        Isoelectric Point: 10.6793

>NTDB_id=142995 WR52_RS20120 WP_000804864.1 4019604..4020062(+) (kre) [Bacillus cereus strain HN001]
MKPSQPQSQLQNQHSINRLAQSIFVVNRHAKAATNPKYLYWLKKTALERLIAEKKAIKEGLHFSRNPRFSQQQSDVLIRL
GDYFFHIPPTKEDFRILPHLGHLESSYRNPKTTLSLTVAKKTLQDYIGPEALKQEKKLSEPVPWYSRTYTKK

Nucleotide


Download         Length: 459 bp        

>NTDB_id=142995 WR52_RS20120 WP_000804864.1 4019604..4020062(+) (kre) [Bacillus cereus strain HN001]
ATGAAACCTTCACAACCACAATCTCAATTACAAAACCAACATTCTATTAATCGACTAGCTCAATCTATTTTCGTTGTGAA
TCGTCATGCTAAAGCAGCTACTAATCCTAAATATTTATACTGGTTAAAAAAGACAGCTTTAGAACGTTTGATTGCTGAAA
AAAAAGCAATTAAAGAAGGATTGCATTTTTCTAGAAACCCACGTTTTAGCCAACAACAATCTGATGTCCTTATACGTTTA
GGCGATTATTTTTTCCACATCCCTCCTACGAAAGAAGATTTTCGAATTCTACCGCATCTTGGTCATCTTGAATCCTCCTA
TCGAAATCCGAAAACAACCTTATCTTTAACAGTAGCAAAAAAAACACTTCAAGATTATATTGGTCCTGAAGCATTAAAAC
AAGAAAAAAAATTAAGTGAGCCTGTTCCATGGTATAGTCGTACTTATACAAAAAAATAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(16-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

64.655

76.316

0.493

Multiple sequence alignment