Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   WR52_RS09415 Genome accession   NZ_CP011155
Coordinates   1867605..1867892 (+) Length   95 a.a.
NCBI ID   WP_000648324.1    Uniprot ID   -
Organism   Bacillus cereus strain HN001     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1862605..1872892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WR52_RS30440 - 1863115..1864424 (+) 1310 WP_154818481.1 IS3 family transposase -
  WR52_RS09405 (WR52_09625) nadE 1864514..1865332 (-) 819 WP_000174896.1 ammonia-dependent NAD(+) synthetase -
  WR52_RS09410 (WR52_09630) - 1865607..1867487 (+) 1881 WP_063536141.1 ABC transporter permease -
  WR52_RS09415 (WR52_09635) abrB 1867605..1867892 (+) 288 WP_000648324.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  WR52_RS09420 (WR52_09640) - 1868168..1869115 (+) 948 WP_000099761.1 serine protease -
  WR52_RS09425 (WR52_09645) - 1869157..1869465 (-) 309 WP_001259909.1 helix-turn-helix transcriptional regulator -
  WR52_RS09430 (WR52_09650) - 1869572..1870507 (+) 936 WP_000877966.1 aldo/keto reductase -
  WR52_RS09435 (WR52_09655) - 1870555..1871730 (+) 1176 WP_001082495.1 MFS transporter -
  WR52_RS33590 (WR52_09660) - 1871779..1871985 (+) 207 WP_001101738.1 hypothetical protein -
  WR52_RS09445 (WR52_09665) - 1872129..1872491 (+) 363 WP_001198796.1 DUF805 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10587.32 Da        Isoelectric Point: 4.8408

>NTDB_id=142986 WR52_RS09415 WP_000648324.1 1867605..1867892(+) (abrB) [Bacillus cereus strain HN001]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEADKIILQKYQPYNACQITGDVSEQNISLANGNITVGIEGAE
YLVKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=142986 WR52_RS09415 WP_000648324.1 1867605..1867892(+) (abrB) [Bacillus cereus strain HN001]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATCCCTAAAGAATTACGCGATGTATTGGG
AATACAAATCAAATCACCGCTTGAAATTTTTGTAGAAGCAGATAAAATCATTTTACAAAAATATCAACCTTACAATGCTT
GCCAAATCACAGGTGATGTTTCAGAGCAGAACATATCATTAGCAAATGGAAATATTACTGTTGGGATAGAGGGAGCGGAA
TATTTAGTAAAAGAAATAGAAAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.556

94.737

0.526

Multiple sequence alignment