Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   WR52_RS06235 Genome accession   NZ_CP011155
Coordinates   1241563..1241886 (-) Length   107 a.a.
NCBI ID   WP_000578879.1    Uniprot ID   A0A9W5KZ99
Organism   Bacillus cereus strain HN001     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1236563..1246886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WR52_RS06210 (WR52_06380) - 1236713..1237999 (+) 1287 WP_048534151.1 D-alanyl-D-alanine carboxypeptidase family protein -
  WR52_RS06215 (WR52_06385) - 1238190..1238759 (+) 570 WP_000767792.1 signal peptidase I -
  WR52_RS06220 (WR52_06390) - 1238820..1239407 (+) 588 WP_000172854.1 CalY family protein -
  WR52_RS06225 (WR52_06395) - 1239542..1240510 (+) 969 WP_080470653.1 DUF4047 domain-containing protein -
  WR52_RS06230 (WR52_06400) calY 1240898..1241491 (+) 594 WP_000053713.1 biofilm matrix protein CalY -
  WR52_RS06235 (WR52_06405) sinR 1241563..1241886 (-) 324 WP_000578879.1 helix-turn-helix domain-containing protein Regulator
  WR52_RS06240 (WR52_06410) - 1241966..1242100 (-) 135 WP_000276219.1 anti-repressor SinI family protein -
  WR52_RS06245 (WR52_06415) inhA1 1242443..1244833 (+) 2391 WP_063535911.1 M6 family metalloprotease immune inhibitor InhA1 -
  WR52_RS06250 (WR52_06420) - 1245005..1246372 (+) 1368 WP_000028375.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12361.25 Da        Isoelectric Point: 9.6244

>NTDB_id=142983 WR52_RS06235 WP_000578879.1 1241563..1241886(-) (sinR) [Bacillus cereus strain HN001]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKEINLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=142983 WR52_RS06235 WP_000578879.1 1241563..1241886(-) (sinR) [Bacillus cereus strain HN001]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAATTAACCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAGTGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(72-99)

Helix-turn-helix (HTH_3)

(6-60)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692

Multiple sequence alignment