Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   WR52_RS00105 Genome accession   NZ_CP011155
Coordinates   21009..21293 (-) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus cereus strain HN001     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 16009..26293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WR52_RS00070 (WR52_00070) tmk 16201..16827 (+) 627 WP_000677218.1 dTMP kinase -
  WR52_RS00075 (WR52_00075) holB 16863..17846 (+) 984 WP_000169564.1 DNA polymerase III subunit delta' -
  WR52_RS00080 (WR52_00080) - 17852..18679 (+) 828 WP_000272429.1 stage 0 sporulation family protein -
  WR52_RS00085 (WR52_00085) yabA 18694..19044 (+) 351 WP_000412063.1 DNA replication initiation control protein YabA -
  WR52_RS00090 (WR52_00090) - 19127..19867 (+) 741 WP_001055366.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  WR52_RS00095 (WR52_00095) - 19854..20144 (+) 291 WP_000414350.1 GIY-YIG nuclease family protein -
  WR52_RS00100 (WR52_00100) rsmI 20113..20988 (+) 876 WP_000267820.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  WR52_RS00105 (WR52_00105) abrB 21009..21293 (-) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  WR52_RS00110 (WR52_00110) metG 21752..23761 (+) 2010 WP_071732546.1 methionine--tRNA ligase -
  WR52_RS00115 (WR52_00115) - 23928..24695 (+) 768 WP_000895851.1 TatD family hydrolase -
  WR52_RS00120 (WR52_00120) rnmV 24910..25467 (+) 558 WP_000692835.1 ribonuclease M5 -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=142966 WR52_RS00105 WP_000843036.1 21009..21293(-) (abrB) [Bacillus cereus strain HN001]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=142966 WR52_RS00105 WP_000843036.1 21009..21293(-) (abrB) [Bacillus cereus strain HN001]
ATGAAATCTACTGGTATTGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGACGCTCTTGAAATCTATGTTGATGACGAAAAAATCATCTTAAAGAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGACGGTAACCTTTCTTTAGCTGAAGGTAAAATCATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851

Multiple sequence alignment