Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   WR47_RS22160 Genome accession   NZ_CP011151
Coordinates   4458241..4460577 (-) Length   778 a.a.
NCBI ID   WP_063548672.1    Uniprot ID   -
Organism   Bacillus cereus strain CMCC P0021     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4453241..4465577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WR47_RS22135 (WR47_22695) - 4455884..4456228 (+) 345 WP_000209466.1 PH domain-containing protein -
  WR47_RS22140 (WR47_22700) - 4456275..4457342 (-) 1068 WP_063548670.1 AI-2E family transporter -
  WR47_RS22145 (WR47_22705) - 4457519..4457731 (+) 213 WP_000242539.1 hypothetical protein -
  WR47_RS22150 (WR47_22710) - 4457778..4457906 (-) 129 WP_001053553.1 YrzQ family protein -
  WR47_RS22155 (WR47_22715) - 4457925..4458113 (-) 189 WP_000469281.1 hypothetical protein -
  WR47_RS22160 (WR47_22720) recD2 4458241..4460577 (-) 2337 WP_063548672.1 ATP-dependent RecD-like DNA helicase Machinery gene
  WR47_RS22165 (WR47_22725) - 4460673..4461332 (-) 660 WP_000066406.1 tetratricopeptide repeat protein -
  WR47_RS22170 (WR47_22730) mnmA 4461442..4462557 (-) 1116 WP_001038010.1 tRNA 2-thiouridine(34) synthase MnmA -
  WR47_RS22175 (WR47_22735) - 4462574..4463719 (-) 1146 WP_000439889.1 cysteine desulfurase family protein -
  WR47_RS22180 (WR47_22740) cymR 4463755..4464171 (-) 417 WP_000704116.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87494.01 Da        Isoelectric Point: 5.2628

>NTDB_id=142901 WR47_RS22160 WP_063548672.1 4458241..4460577(-) (recD2) [Bacillus cereus strain CMCC P0021]
MGNQHAMDLFEEEKKFIKAQVLHTIFHNEENLYSVVSMKVIETNETYDEKKVMINGHFPRMHEDEVFTLTGHFKDHPKYG
KQYMVETFKKELPQTKAGMVQYLASDLFKGIGKRTAEKIVDHLGEHAISKIMDDPEALNGVVNKQKAQEIYETIVEHQGL
EKVMSFLNGYGFGTKLSIKIYQQYKEMTLEVIRNNPYQLIEEVDGIGFGRADDIGRALGISGNHDDRVRAGCFYTLENVS
LQLGHVYMRKDQLVRETMSLLNNQEGRVTEEDIIGCIETMQSEGKVIIEEERVYLATLFYSEKGVVKSIRRLMNQEETPS
FPEAEVLKTLGEIEEQLNVQYAPFQQEAIQTALHKPMMLLTGGPGTGKTTVIKGIVEMYASLHGLSLNPNEYSDDNPFPI
LLTAPTGRAAKRMSESTGLPACTIHRLLGWTPEGSFQRNETDPVQGKLLIIDEFSMVDIWLANQLFKSLPTNIQVIVVGD
EDQLPSVGPGQVLKDLLNAGAVPTVKLTEIYRQAEGSSVIQLAHAIKDGTLPPDLAQNKKDRSFISCTGAQIVEVVKKVC
ENAKTKGFSARDVQVLAPMYRGPAGINVLNEALQQVFNPKREKSKEIAYGDVVYRRGDKVLQLVNQPESQVFNGDIGEIV
SVFYAKENVEQQDMIIVSFDGIEVTYTKPDLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYNRMLRRNLIYTGITRSKKF
LIICGEEVAFQSGVNRLDDAMRQTTLASRLQESQGEVQMVTVNGEEMDVENISPYDFM

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=142901 WR47_RS22160 WP_063548672.1 4458241..4460577(-) (recD2) [Bacillus cereus strain CMCC P0021]
ATGGGAAATCAACATGCAATGGATTTGTTTGAGGAAGAGAAAAAATTTATAAAAGCGCAAGTTCTTCATACCATTTTCCA
CAACGAAGAAAACCTCTATTCCGTTGTCAGTATGAAAGTCATTGAAACGAATGAAACGTATGACGAAAAGAAAGTAATGA
TAAACGGTCATTTTCCCCGCATGCATGAAGATGAAGTGTTTACATTGACAGGTCACTTTAAGGACCATCCAAAGTATGGA
AAACAATATATGGTTGAAACATTTAAAAAAGAATTGCCGCAAACAAAAGCAGGTATGGTGCAATATTTAGCGAGTGATTT
ATTTAAAGGGATAGGAAAGCGTACAGCCGAAAAAATTGTGGATCATCTCGGGGAACATGCTATTTCTAAAATTATGGATG
ACCCTGAGGCGTTAAATGGTGTTGTTAACAAACAAAAGGCCCAGGAAATATATGAGACAATTGTTGAACATCAAGGATTA
GAAAAAGTAATGAGCTTTTTAAATGGTTACGGTTTTGGAACGAAACTTTCTATTAAGATTTACCAGCAATATAAAGAGAT
GACATTAGAAGTGATTCGTAATAATCCGTATCAACTTATTGAAGAAGTGGACGGGATTGGTTTTGGACGAGCGGATGATA
TAGGGCGTGCGTTAGGGATATCGGGTAATCACGACGACCGTGTACGAGCGGGATGTTTTTACACATTAGAGAATGTCTCA
TTGCAACTTGGTCACGTTTATATGAGGAAAGATCAACTTGTAAGAGAAACGATGTCACTTTTAAACAATCAAGAAGGAAG
AGTGACTGAAGAAGATATTATAGGTTGTATTGAAACGATGCAAAGTGAAGGGAAAGTCATCATAGAAGAAGAACGAGTGT
ATTTAGCAACTTTATTCTACTCTGAAAAAGGTGTTGTAAAGTCTATTCGTCGATTGATGAATCAAGAGGAAACACCTTCA
TTTCCTGAAGCAGAAGTGTTAAAAACATTAGGTGAAATTGAAGAACAGTTGAATGTACAATATGCACCGTTTCAGCAAGA
AGCAATTCAAACGGCACTTCATAAACCGATGATGTTATTGACAGGTGGACCAGGAACAGGGAAAACAACAGTTATTAAAG
GGATTGTTGAAATGTATGCGTCACTTCACGGGTTATCGTTAAATCCGAATGAATACAGTGATGATAATCCATTTCCAATA
CTATTAACAGCTCCAACAGGAAGAGCAGCGAAGCGGATGAGTGAATCGACAGGACTTCCAGCTTGCACAATTCACCGTTT
ACTTGGTTGGACGCCAGAAGGATCTTTCCAGCGCAATGAAACGGATCCTGTCCAAGGTAAGCTCCTTATTATCGATGAAT
TTTCAATGGTTGATATTTGGCTCGCAAATCAGCTATTTAAGTCGCTACCAACGAATATTCAAGTTATCGTTGTAGGTGAT
GAAGATCAGTTGCCATCTGTAGGACCTGGACAAGTATTAAAAGATTTATTAAATGCAGGTGCAGTTCCGACAGTGAAGCT
TACTGAAATTTATCGTCAAGCAGAAGGATCATCTGTTATTCAACTTGCCCATGCGATCAAAGACGGCACACTCCCGCCAG
ATTTAGCGCAAAATAAAAAAGATCGTTCGTTTATCAGCTGTACAGGGGCTCAAATTGTTGAGGTTGTGAAAAAAGTTTGC
GAAAACGCTAAAACAAAAGGCTTTAGTGCAAGGGATGTTCAAGTATTAGCACCGATGTACCGCGGGCCTGCTGGTATTAA
TGTATTAAACGAAGCGCTGCAACAAGTATTTAATCCGAAGAGGGAAAAGAGTAAAGAAATTGCTTACGGTGATGTTGTGT
ACCGAAGAGGCGATAAAGTACTGCAACTCGTGAATCAGCCGGAGAGCCAAGTGTTTAATGGTGATATTGGGGAAATTGTT
TCGGTGTTTTATGCGAAAGAGAACGTTGAGCAACAAGATATGATTATCGTTTCATTTGATGGAATTGAGGTAACGTATAC
GAAGCCCGATTTAAATCAAATTACGCATGCATATTGTTGTTCCATTCATAAATCACAAGGTAGTGAATTTCCGATTGTTA
TTATGCCGATTGTGAAAAGTTACAACCGTATGTTACGCCGTAATTTAATTTACACGGGCATTACAAGAAGTAAGAAGTTC
CTTATTATTTGCGGGGAGGAAGTAGCTTTCCAATCTGGTGTAAATCGCCTTGATGATGCAATGCGTCAAACAACTTTAGC
TAGTCGCTTGCAGGAGTCACAAGGAGAAGTGCAGATGGTCACAGTTAATGGCGAAGAAATGGACGTGGAAAACATTTCAC
CGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-659)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-724)

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)

AAA domain (AAA_30)

(341-548)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

56.89

100

0.578

Multiple sequence alignment