Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   WR47_RS20160 Genome accession   NZ_CP011151
Coordinates   4099257..4099715 (+) Length   152 a.a.
NCBI ID   WP_000804864.1    Uniprot ID   -
Organism   Bacillus cereus strain CMCC P0021     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 4094257..4104715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WR47_RS20145 (WR47_20630) - 4094925..4095161 (+) 237 WP_000283738.1 hypothetical protein -
  WR47_RS20150 (WR47_20635) - 4095324..4097432 (-) 2109 WP_063548519.1 polyphosphate kinase -
  WR47_RS20155 (WR47_20640) - 4097541..4099115 (-) 1575 WP_063548521.1 Ppx/GppA family phosphatase -
  WR47_RS20160 (WR47_20645) kre 4099257..4099715 (+) 459 WP_000804864.1 YkyB family protein Regulator
  WR47_RS20165 (WR47_20650) - 4099747..4100409 (-) 663 WP_000922465.1 YkyA family protein -
  WR47_RS20170 (WR47_20655) - 4101023..4101676 (-) 654 WP_053563727.1 diguanylate cyclase domain-containing protein -
  WR47_RS20175 (WR47_20660) - 4101840..4102073 (+) 234 WP_000939446.1 SPP1 phage holin family protein -
  WR47_RS20180 (WR47_20665) - 4102106..4102606 (-) 501 WP_063548523.1 hypothetical protein -
  WR47_RS20185 (WR47_20670) - 4103018..4104559 (+) 1542 WP_053563725.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17757.49 Da        Isoelectric Point: 10.6793

>NTDB_id=142894 WR47_RS20160 WP_000804864.1 4099257..4099715(+) (kre) [Bacillus cereus strain CMCC P0021]
MKPSQPQSQLQNQHSINRLAQSIFVVNRHAKAATNPKYLYWLKKTALERLIAEKKAIKEGLHFSRNPRFSQQQSDVLIRL
GDYFFHIPPTKEDFRILPHLGHLESSYRNPKTTLSLTVAKKTLQDYIGPEALKQEKKLSEPVPWYSRTYTKK

Nucleotide


Download         Length: 459 bp        

>NTDB_id=142894 WR47_RS20160 WP_000804864.1 4099257..4099715(+) (kre) [Bacillus cereus strain CMCC P0021]
ATGAAACCTTCACAACCACAATCTCAATTACAAAACCAACATTCTATTAATCGACTAGCTCAATCTATTTTCGTTGTGAA
TCGTCATGCTAAAGCAGCTACTAATCCTAAATATTTATACTGGTTAAAAAAGACAGCTTTAGAACGTTTGATTGCTGAAA
AAAAAGCAATTAAAGAAGGATTACATTTTTCTAGAAACCCACGTTTTAGCCAACAACAATCTGATGTCCTTATACGTTTA
GGCGATTATTTTTTCCACATCCCTCCTACGAAAGAAGATTTTCGAATTCTACCGCATCTTGGTCATCTTGAATCCTCCTA
TCGAAATCCGAAAACAACCTTATCTTTAACAGTAGCAAAAAAAACACTTCAAGATTATATTGGTCCTGAAGCATTGAAAC
AAGAAAAAAAATTAAGTGAACCTGTTCCATGGTATAGTCGTACTTATACAAAAAAATAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(16-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

64.655

76.316

0.493

Multiple sequence alignment