Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   VT48_RS11715 Genome accession   NZ_CP011150
Coordinates   2303095..2303865 (-) Length   256 a.a.
NCBI ID   WP_007501304.1    Uniprot ID   -
Organism   Bacillus altitudinis strain W3     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2298095..2308865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VT48_RS11695 (VT48_11695) - 2298188..2299009 (-) 822 WP_008342399.1 pyruvate, water dikinase regulatory protein -
  VT48_RS11700 (VT48_11700) - 2299035..2299673 (-) 639 WP_024423017.1 helix-turn-helix transcriptional regulator -
  VT48_RS11705 (VT48_11705) glyS 2299840..2301885 (-) 2046 WP_046344006.1 glycine--tRNA ligase subunit beta -
  VT48_RS11710 (VT48_11710) glyQ 2301878..2302765 (-) 888 WP_003217487.1 glycine--tRNA ligase subunit alpha -
  VT48_RS11715 (VT48_11715) recO 2303095..2303865 (-) 771 WP_007501304.1 DNA repair protein RecO Machinery gene
  VT48_RS19440 - 2303901..2304044 (-) 144 WP_008342408.1 YqzL family protein -
  VT48_RS11720 (VT48_11720) era 2304192..2305097 (-) 906 WP_007501305.1 GTPase Era -
  VT48_RS11725 (VT48_11725) - 2305090..2305488 (-) 399 WP_008342410.1 cytidine deaminase -
  VT48_RS11730 (VT48_11730) - 2305601..2305987 (-) 387 WP_008342413.1 diacylglycerol kinase family protein -
  VT48_RS11735 (VT48_11735) ybeY 2305965..2306444 (-) 480 WP_017358013.1 rRNA maturation RNase YbeY -
  VT48_RS11740 (VT48_11740) - 2306445..2308559 (-) 2115 WP_393920037.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29345.04 Da        Isoelectric Point: 8.4348

>NTDB_id=142842 VT48_RS11715 WP_007501304.1 2303095..2303865(-) (recO) [Bacillus altitudinis strain W3]
MLIKSEGIVLRTTDYGETNKIVTLLTREHGKIGVMARGAKKSNSRLSAISQPFLYGTFLIQSSTGLGTLQQGEMMESMRT
IREDLFLTAYAAYMTELLDKGTEEKKPNPYLFELLLQSLRHLNEGTDADIILFIVEVKMLSVMGLKPELDQCVHCGQKEG
QFHFSIRDNGFICRQCFSKDPYKLPLSPAAARLLRLFHYFDLSRLGQVDVKPQTKQEIRQVLDHYYEEYSGLYLKSKKFM
NQMESMKKLMDGENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=142842 VT48_RS11715 WP_007501304.1 2303095..2303865(-) (recO) [Bacillus altitudinis strain W3]
ATGCTCATTAAAAGTGAAGGAATCGTCCTTAGAACAACAGATTATGGCGAAACAAACAAAATTGTCACGCTGCTCACTAG
AGAACATGGGAAAATTGGTGTGATGGCAAGAGGCGCTAAGAAATCGAACAGCCGCCTGTCAGCCATAAGCCAGCCGTTTT
TATACGGAACCTTCCTGATCCAATCATCAACAGGACTTGGAACGCTCCAGCAAGGTGAAATGATGGAAAGCATGCGAACC
ATTCGGGAAGATTTATTTCTGACTGCATATGCCGCATATATGACAGAATTACTTGATAAAGGAACAGAAGAAAAGAAGCC
AAACCCTTACTTGTTTGAACTTCTTCTTCAATCTTTACGCCATCTCAATGAAGGCACAGATGCTGATATTATTTTATTTA
TCGTAGAGGTTAAAATGCTGTCAGTGATGGGGTTGAAGCCTGAACTGGACCAATGTGTACACTGCGGTCAAAAAGAAGGG
CAGTTCCATTTCTCAATTAGAGATAACGGATTCATCTGTAGGCAATGCTTTTCTAAAGATCCATATAAACTGCCCTTATC
CCCAGCAGCAGCAAGACTGCTCCGTTTGTTTCATTATTTTGATTTATCAAGGCTTGGTCAGGTTGACGTGAAACCACAGA
CGAAACAAGAAATTCGTCAAGTGCTCGATCATTATTATGAAGAGTATTCAGGTCTTTATTTAAAATCAAAAAAATTCATG
AATCAAATGGAATCCATGAAAAAGCTAATGGACGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

75.781

100

0.758

Multiple sequence alignment