Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | VT48_RS11380 | Genome accession | NZ_CP011150 |
| Coordinates | 2247115..2247450 (+) | Length | 111 a.a. |
| NCBI ID | WP_017357978.1 | Uniprot ID | - |
| Organism | Bacillus altitudinis strain W3 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2242115..2252450
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VT48_RS11365 (VT48_11365) | gcvT | 2242591..2243688 (-) | 1098 | WP_046343961.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| VT48_RS11370 (VT48_11370) | - | 2244250..2245920 (+) | 1671 | WP_035390799.1 | DEAD/DEAH box helicase | - |
| VT48_RS11375 (VT48_11375) | - | 2245935..2246732 (+) | 798 | WP_035390802.1 | YqhG family protein | - |
| VT48_RS19425 | - | 2246917..2247081 (+) | 165 | WP_080934047.1 | anti-repressor SinI family protein | - |
| VT48_RS11380 (VT48_11380) | sinR | 2247115..2247450 (+) | 336 | WP_017357978.1 | transcriptional regulator SinR | Regulator |
| VT48_RS11385 (VT48_11385) | tasA | 2247518..2248318 (-) | 801 | WP_035390805.1 | biofilm matrix protein TasA | - |
| VT48_RS11390 (VT48_11390) | sipW | 2248377..2248949 (-) | 573 | WP_041091749.1 | signal peptidase I SipW | - |
| VT48_RS11395 (VT48_11395) | tapA | 2248999..2249526 (-) | 528 | WP_046343966.1 | amyloid fiber anchoring/assembly protein TapA | - |
| VT48_RS11400 (VT48_11400) | - | 2249779..2250105 (+) | 327 | WP_039166025.1 | DUF3889 domain-containing protein | - |
| VT48_RS11405 (VT48_11405) | - | 2250139..2250339 (-) | 201 | WP_046343970.1 | YqzE family protein | - |
| VT48_RS11410 (VT48_11410) | - | 2250400..2250783 (-) | 384 | WP_046343972.1 | competence type IV pilus minor pilin ComGG | - |
| VT48_RS11415 (VT48_11415) | comGF | 2250780..2251277 (-) | 498 | WP_046343974.1 | competence type IV pilus minor pilin ComGF | - |
| VT48_RS11420 (VT48_11420) | comGE | 2251219..2251533 (-) | 315 | WP_007501227.1 | competence type IV pilus minor pilin ComGE | - |
| VT48_RS11425 (VT48_11425) | comGD | 2251517..2251963 (-) | 447 | WP_017357985.1 | competence type IV pilus minor pilin ComGD | - |
| VT48_RS11430 (VT48_11430) | comGC | 2251956..2252249 (-) | 294 | WP_008342186.1 | competence type IV pilus major pilin ComGC | Machinery gene |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12936.47 Da Isoelectric Point: 4.8062
>NTDB_id=142839 VT48_RS11380 WP_017357978.1 2247115..2247450(+) (sinR) [Bacillus altitudinis strain W3]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNENDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKKQEEE
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNENDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKKQEEE
Nucleotide
Download Length: 336 bp
>NTDB_id=142839 VT48_RS11380 WP_017357978.1 2247115..2247450(+) (sinR) [Bacillus altitudinis strain W3]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTAAACGAAAATGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
GCAAGAAGAGGAGTAA
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTAAACGAAAATGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
GCAAGAAGAGGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
92.793 |
100 |
0.928 |