Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   VT48_RS10265 Genome accession   NZ_CP011150
Coordinates   2040321..2040956 (+) Length   211 a.a.
NCBI ID   WP_017359733.1    Uniprot ID   A0A653S7S4
Organism   Bacillus altitudinis strain W3     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2035321..2045956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VT48_RS10225 (VT48_10225) - 2035485..2036603 (+) 1119 WP_024718533.1 NADH-dependent flavin oxidoreductase -
  VT48_RS10230 (VT48_10230) - 2036653..2037159 (-) 507 WP_039165664.1 PTS glucose transporter subunit IIA -
  VT48_RS10235 (VT48_10235) - 2037328..2037747 (+) 420 WP_007500867.1 Hsp20/alpha crystallin family protein -
  VT48_RS10240 (VT48_10240) - 2037769..2038221 (-) 453 WP_017359729.1 YppG family protein -
  VT48_RS10245 (VT48_10245) - 2038330..2038710 (-) 381 WP_225310452.1 YppE family protein -
  VT48_RS10250 (VT48_10250) - 2038760..2038993 (-) 234 WP_231131595.1 DUF5446 family protein -
  VT48_RS10255 (VT48_10255) sspM 2039190..2039294 (+) 105 WP_017359731.1 acid-soluble spore protein SspM -
  VT48_RS10260 (VT48_10260) - 2039318..2040274 (-) 957 WP_017359732.1 DUF2515 domain-containing protein -
  VT48_RS10265 (VT48_10265) recU 2040321..2040956 (+) 636 WP_017359733.1 Holliday junction resolvase RecU Machinery gene
  VT48_RS10270 (VT48_10270) - 2040976..2043663 (+) 2688 WP_019744017.1 PBP1A family penicillin-binding protein -
  VT48_RS10275 (VT48_10275) - 2043699..2044208 (-) 510 WP_019744018.1 YpoC family protein -
  VT48_RS10280 (VT48_10280) nth 2044205..2044867 (-) 663 WP_008344602.1 endonuclease III -
  VT48_RS10285 (VT48_10285) - 2044885..2045589 (-) 705 WP_046343833.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24314.60 Da        Isoelectric Point: 9.6582

>NTDB_id=142836 VT48_RS10265 WP_017359733.1 2040321..2040956(+) (recU) [Bacillus altitudinis strain W3]
MIRYPNGKSYQPIQQIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLSATDLFFFWERQQ
QNGRKSISKDELMEAGHLMTLGYSPRIDYIKVVETLHFSDDSKQHLRSKKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=142836 VT48_RS10265 WP_017359733.1 2040321..2040956(+) (recU) [Bacillus altitudinis strain W3]
ATGATTCGGTATCCTAACGGAAAATCGTATCAGCCCATTCAACAAATTGGGACAAAAAAAAGAATCAGCGGCGAATCATC
TTATAGTAACCGCGGGATGACGCTTGAAGCTGACTTAAATGAAACGAACCAGTACTATTTGGTCAACGGGATTGCAGTCA
TTCATAAAAAGCCTACCCCTGTTCAAATTGTCAATGTGGATTATCCAAAAAGAAGCGCTGCTGTCATTAAAGAAGCCTAT
TTTAAACAATCCTCCACAACAGACTACAACGGGGTATACAAAGGGCGTTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACCACCTCGTTTCCACTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGTATTT
GTTTTGTTATTATATCCGCATTTGGTTCCGTTTATTATTTGTCCGCTACTGACCTCTTCTTCTTTTGGGAGCGGCAGCAG
CAAAACGGCCGTAAATCCATTAGCAAAGATGAATTAATGGAAGCAGGTCACCTCATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGACAGCAAGCAACATTTACGTTCGAAAAAGGTTTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A653S7S4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

72.772

95.735

0.697

Multiple sequence alignment