Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   VT48_RS07225 Genome accession   NZ_CP011150
Coordinates   1417303..1417581 (+) Length   92 a.a.
NCBI ID   WP_017359400.1    Uniprot ID   A0A9X0FXL5
Organism   Bacillus altitudinis strain W3     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1412303..1422581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VT48_RS07205 (VT48_07205) - 1412394..1412669 (-) 276 WP_008345136.1 hypothetical protein -
  VT48_RS07210 (VT48_07210) - 1412814..1414433 (+) 1620 WP_046343439.1 ABC-F family ATP-binding cassette domain-containing protein -
  VT48_RS07215 (VT48_07215) - 1414474..1415706 (-) 1233 WP_035700613.1 aminopeptidase -
  VT48_RS19770 - 1415813..1415944 (-) 132 WP_003210922.1 protein YkpC -
  VT48_RS07220 (VT48_07220) mreBH 1416019..1417026 (-) 1008 WP_017359401.1 rod-share determining protein MreBH -
  VT48_RS07225 (VT48_07225) abrB 1417303..1417581 (+) 279 WP_017359400.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  VT48_RS07230 (VT48_07230) - 1417726..1419015 (+) 1290 WP_041092430.1 ATP-binding protein -
  VT48_RS07235 (VT48_07235) - 1419043..1419885 (+) 843 WP_046343442.1 gamma-glutamylcyclotransferase -
  VT48_RS07240 (VT48_07240) - 1419923..1420591 (+) 669 WP_008345123.1 potassium channel family protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10305.97 Da        Isoelectric Point: 4.5332

>NTDB_id=142830 VT48_RS07225 WP_017359400.1 1417303..1417581(+) (abrB) [Bacillus altitudinis strain W3]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSMEFFIDGDKIVLKKYQPEGVCLMTGEITSENHEYGNGQITLSAEGAE
LLLKELQEALQQ

Nucleotide


Download         Length: 279 bp        

>NTDB_id=142830 VT48_RS07225 WP_017359400.1 1417303..1417581(+) (abrB) [Bacillus altitudinis strain W3]
TTGAAATCTATCGGAGTTGTAAGAAAAGTAGATGAACTAGGGCGTATTGTGATGCCAATCGAATTGAGAAGAGCACTTGA
TATCGCTATTAAAGACAGTATGGAATTTTTTATAGATGGAGATAAAATCGTCTTGAAAAAATATCAGCCAGAGGGCGTCT
GCCTGATGACTGGTGAGATTACTTCTGAGAACCACGAGTATGGAAATGGTCAAATTACATTAAGCGCTGAAGGCGCAGAA
CTACTGCTAAAAGAGCTTCAAGAAGCCCTTCAGCAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.348

100

0.543

Multiple sequence alignment