Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpC   Type   Regulator
Locus tag   VT48_RS06830 Genome accession   NZ_CP011150
Coordinates   1339163..1341268 (-) Length   701 a.a.
NCBI ID   WP_046343381.1    Uniprot ID   -
Organism   Bacillus altitudinis strain W3     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1334163..1346268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VT48_RS06805 (VT48_06805) - 1334404..1334646 (+) 243 WP_008346101.1 aspartyl-phosphate phosphatase Spo0E family protein -
  VT48_RS06810 (VT48_06810) - 1334698..1336197 (-) 1500 WP_008346092.1 ATP-binding protein -
  VT48_RS06815 (VT48_06815) - 1336402..1336857 (+) 456 WP_003211701.1 MarR family winged helix-turn-helix transcriptional regulator -
  VT48_RS06820 (VT48_06820) motB 1337044..1337811 (-) 768 WP_024719648.1 flagellar motor protein MotB -
  VT48_RS06825 (VT48_06825) motA 1337804..1338598 (-) 795 WP_008346088.1 flagellar motor stator protein MotA -
  VT48_RS06830 (VT48_06830) clpC 1339163..1341268 (-) 2106 WP_046343381.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  VT48_RS06835 (VT48_06835) - 1341514..1342557 (+) 1044 WP_046343385.1 membrane protein -
  VT48_RS06840 (VT48_06840) queC 1342832..1343488 (+) 657 WP_046343386.1 7-cyano-7-deazaguanine synthase QueC -
  VT48_RS06845 (VT48_06845) queD 1343489..1343929 (+) 441 WP_046343388.1 6-carboxytetrahydropterin synthase QueD -
  VT48_RS06850 (VT48_06850) queE 1343922..1344653 (+) 732 WP_019743916.1 7-carboxy-7-deazaguanine synthase QueE -
  VT48_RS06855 (VT48_06855) queF 1344669..1345166 (+) 498 WP_003211403.1 preQ(1) synthase -
  VT48_RS06860 (VT48_06860) - 1345630..1345848 (+) 219 WP_017367128.1 hypothetical protein -

Sequence

Protein


Download         Length: 701 a.a.        Molecular weight: 78160.77 Da        Isoelectric Point: 5.1807

>NTDB_id=142827 VT48_RS06830 WP_046343381.1 1339163..1341268(-) (clpC) [Bacillus altitudinis strain W3]
MRCQHCQVNEATIRLNMQVNSARSQMVLCEDCYTSLMEQSKMKMGPNLFGGGSFFSEQAGHATSQERPKQKGLLDELGRN
LTDGAHAGLIDPVIGRDEEVTRVIEILNRRNKNNPVLIGEPGVGKTAIAEGLALKIANGDVPNKLKNKQVYLLDVSSLVA
NTGVRGQFEERMKQLIKELQSRKNIILFVDEIHLLVGAGSAEGSMDAGNILKPALARGELQLVGATTLKEYRQIEKDAAL
ERRFQPVIVDEPTQDEAFEILKGIQDKYEAYHGVTYSDEAIKACVQLSSRYIQDRHLPDKAIDLMDEAGSKANLSIDAAS
EDELTNRLAQIAAEKQAALNEERYEKAAKLRDEEEAIEARLQNKTNDKEHVVTAEDIQSIVEQKTGIPVGKLQADEQTKM
KEIDVRLKARVIGQEHAVEKVAKAVKRSRAGLKSKHRPTGSFLFVGPTGVGKTELSKTLAEELFGSKEAIIRLDMSEYME
KHSVSKIIGSPPGYVGHDEAGQLTEKVRRKPYSIILLDEIEKAHPDVQHMFLQIMEDGRLTDSQGRTVSFKDTVIIMTSN
AGSTDKKAVKVGFQSEQEEAIEEQSLIDSLSAYFKPEFLNRFDSIIQFDSLDKDDLVKIVDLLLKDLSEQLKEQNLTVHV
TNEAKEKIAELGYHPAFGARPLRRTIQEHVEDQMTDILLEEEQLTGFTVDVEHDEIVVKKS

Nucleotide


Download         Length: 2106 bp        

>NTDB_id=142827 VT48_RS06830 WP_046343381.1 1339163..1341268(-) (clpC) [Bacillus altitudinis strain W3]
ATGCGTTGTCAACATTGTCAAGTAAATGAAGCAACTATTCGCCTGAATATGCAAGTAAATTCGGCCCGTAGCCAAATGGT
TTTATGTGAAGACTGCTATACCTCTTTGATGGAACAGTCAAAAATGAAAATGGGTCCTAACCTTTTCGGAGGCGGTTCAT
TCTTCTCTGAGCAAGCAGGACATGCGACGAGCCAAGAGCGGCCTAAACAAAAAGGCTTGCTAGACGAGCTTGGCCGGAAC
TTAACGGATGGCGCACATGCTGGTTTAATCGATCCTGTCATTGGCCGTGATGAAGAAGTCACAAGAGTCATTGAGATTTT
AAATAGAAGAAATAAAAACAATCCTGTCCTCATTGGTGAACCTGGTGTTGGTAAAACGGCCATAGCCGAAGGACTAGCAC
TAAAAATTGCAAATGGAGATGTACCAAATAAATTAAAGAACAAACAAGTTTATTTATTAGATGTCTCTTCACTTGTGGCA
AACACAGGTGTACGTGGTCAATTTGAGGAACGGATGAAGCAATTAATCAAAGAATTGCAAAGCCGTAAAAATATCATCTT
ATTCGTTGATGAAATTCATCTTCTTGTAGGCGCAGGCTCTGCCGAAGGGTCAATGGATGCCGGAAACATTTTGAAACCAG
CTCTAGCTCGAGGGGAACTGCAGCTAGTAGGTGCGACAACATTAAAAGAGTATCGTCAAATTGAAAAAGATGCTGCCCTT
GAACGCAGATTCCAGCCCGTCATCGTTGATGAGCCAACACAGGATGAAGCATTCGAGATCTTAAAAGGCATTCAAGATAA
GTATGAAGCGTATCATGGCGTCACCTATTCTGACGAAGCCATTAAAGCGTGTGTTCAATTATCTTCGCGGTATATTCAAG
ACCGCCACTTGCCGGATAAAGCCATTGATTTAATGGATGAAGCAGGTTCAAAAGCGAATCTCTCCATTGATGCAGCAAGT
GAAGATGAATTAACAAACCGTCTTGCGCAAATCGCCGCTGAAAAACAAGCTGCTTTAAATGAAGAACGATATGAAAAAGC
AGCGAAGCTTCGAGACGAAGAAGAAGCGATTGAAGCGAGATTGCAAAACAAAACAAATGACAAAGAACATGTCGTCACAG
CTGAGGACATTCAGTCGATTGTAGAACAAAAAACAGGTATCCCTGTCGGCAAACTGCAAGCAGACGAACAAACAAAAATG
AAAGAAATTGATGTCCGCTTAAAAGCCCGCGTCATTGGTCAGGAACATGCGGTTGAAAAAGTGGCGAAAGCCGTAAAAAG
AAGCAGAGCCGGCTTAAAATCAAAACACAGACCAACTGGCTCCTTCCTTTTCGTTGGGCCAACAGGCGTCGGGAAAACCG
AATTGTCTAAAACATTAGCGGAAGAATTATTTGGCTCAAAAGAAGCGATCATTCGTTTAGATATGAGTGAGTACATGGAG
AAACATTCCGTGTCCAAAATCATCGGTTCTCCTCCTGGTTACGTTGGACATGATGAAGCCGGACAGCTCACGGAAAAGGT
TCGCAGAAAACCATACAGCATCATTTTGCTCGATGAAATCGAAAAAGCGCACCCTGATGTCCAGCATATGTTCCTTCAAA
TCATGGAAGATGGCCGTCTAACAGACAGTCAAGGCAGAACCGTCAGCTTTAAAGACACAGTTATCATTATGACAAGTAAC
GCTGGCAGCACAGATAAAAAAGCAGTCAAAGTCGGATTCCAGTCTGAACAAGAAGAAGCCATCGAAGAACAATCATTGAT
TGATTCACTGAGCGCTTATTTCAAACCGGAATTCTTGAACCGTTTTGACAGCATCATTCAGTTTGATTCATTAGATAAAG
ACGATTTAGTCAAAATTGTGGATCTTCTGCTCAAAGATTTGTCAGAGCAGTTAAAAGAACAAAATCTAACTGTTCACGTC
ACAAACGAAGCGAAAGAAAAAATCGCTGAACTTGGTTACCATCCAGCATTTGGGGCTCGTCCGTTACGAAGAACGATTCA
AGAGCATGTTGAAGATCAAATGACGGACATCTTGCTTGAAGAAGAACAACTTACTGGATTTACAGTCGATGTTGAACATG
ACGAAATTGTTGTGAAAAAGAGCTAA

Domains

Predicted by InterproScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(116-248)

AAA lid domain (AAA_lid_9)

(253-353)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(611-686)

AAA domain (Cdc48 subfamily) (AAA_2)

(437-605)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Lactococcus lactis subsp. cremoris KW2

56.969

100

0.601
  clpE Streptococcus mutans UA159

56.51

100

0.601
  clpE Streptococcus pneumoniae Rx1

55.846

100

0.579
  clpE Streptococcus pneumoniae D39

55.846

100

0.579
  clpE Streptococcus pneumoniae R6

55.846

100

0.579
  clpE Streptococcus pneumoniae TIGR4

55.846

100

0.579
  clpC Bacillus subtilis subsp. subtilis str. 168

53.651

95.72

0.514
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

46.855

90.728

0.425
  clpC Streptococcus thermophilus LMD-9

44.427

92.154

0.409
  clpC Streptococcus thermophilus LMG 18311

44.272

92.154

0.408
  clpC Streptococcus pneumoniae TIGR4

44.479

90.442

0.402
  clpC Streptococcus pneumoniae Rx1

44.674

89.729

0.401
  clpC Streptococcus pneumoniae D39

44.674

89.729

0.401
  clpC Streptococcus mutans UA159

44.127

89.872

0.397

Multiple sequence alignment