Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   VT48_RS05110 Genome accession   NZ_CP011150
Coordinates   1024605..1025555 (+) Length   316 a.a.
NCBI ID   WP_017366964.1    Uniprot ID   A0A9X0FWU4
Organism   Bacillus altitudinis strain W3     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1019605..1030555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VT48_RS05090 (VT48_05090) - 1020840..1021322 (+) 483 WP_046343108.1 hypothetical protein -
  VT48_RS05095 (VT48_05095) - 1021353..1022792 (-) 1440 WP_025207099.1 PLP-dependent aminotransferase family protein -
  VT48_RS05100 (VT48_05100) - 1022936..1024105 (+) 1170 WP_017360232.1 MFS transporter -
  VT48_RS05105 (VT48_05105) - 1024168..1024446 (+) 279 WP_046343111.1 barstar family protein -
  VT48_RS05110 (VT48_05110) ceuB 1024605..1025555 (+) 951 WP_017366964.1 ABC transporter permease Machinery gene
  VT48_RS05115 (VT48_05115) - 1025548..1026498 (+) 951 WP_046343113.1 iron chelate uptake ABC transporter family permease subunit -
  VT48_RS05120 (VT48_05120) - 1026489..1027247 (+) 759 WP_046343114.1 ABC transporter ATP-binding protein -
  VT48_RS05125 (VT48_05125) - 1027270..1028214 (+) 945 WP_008348640.1 siderophore ABC transporter substrate-binding protein -
  VT48_RS05130 (VT48_05130) - 1028353..1029309 (+) 957 WP_007499147.1 LCP family protein -
  VT48_RS05135 (VT48_05135) - 1029344..1029778 (-) 435 WP_035700181.1 hypothetical protein -
  VT48_RS05140 (VT48_05140) - 1029864..1030226 (-) 363 WP_008348633.1 hypothetical protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34945.28 Da        Isoelectric Point: 9.7475

>NTDB_id=142817 VT48_RS05110 WP_017366964.1 1024605..1025555(+) (ceuB) [Bacillus altitudinis strain W3]
MKLYQLSLLFVCLACASLFVGVQDLSLLQLFHLSDEQMNTLFSSRIPRLMSIVLAGMSLSLCGFIMQSMTRNKFVSPTTA
GTMDWAKLGILTAMLVFTQASPLMKMAIAFLFTLAGNLLFLKILRHIKVNDTIYVPLVGLMFGGIVSSISTFIAYKYDLI
QNVSAWLQGDFSLIVQGRYELLYVSVPLLIIAYLYADRFTVAGMGESFAVNLGLTYKRVMAVGLVIVSMITSVTILTVGM
LPFLGLIIPNIVSIYRGDHLKKSLPHTALLGAIFVLICDVLGRVIIYPYEISVGLMVGIIGSAIFLYMLLRRKRYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=142817 VT48_RS05110 WP_017366964.1 1024605..1025555(+) (ceuB) [Bacillus altitudinis strain W3]
ATGAAGTTGTACCAATTAAGTTTGTTGTTTGTGTGTTTGGCATGTGCGTCGCTGTTTGTCGGAGTACAGGACCTGTCTCT
TTTACAGTTGTTTCATCTATCAGATGAACAAATGAACACCTTATTTTCAAGTCGCATCCCGCGGCTGATGAGTATTGTGC
TTGCTGGCATGAGCCTGAGCTTATGCGGTTTTATCATGCAAAGCATGACGAGAAATAAATTTGTCTCTCCAACGACTGCA
GGAACAATGGATTGGGCCAAGCTGGGTATTTTAACCGCTATGCTTGTTTTTACACAGGCAAGCCCGCTGATGAAAATGGC
GATTGCGTTTTTATTTACGTTAGCTGGCAATCTATTATTCTTAAAAATTCTACGCCATATTAAGGTGAACGATACGATCT
ACGTACCGTTAGTCGGCTTAATGTTTGGCGGAATTGTTAGTTCAATTTCCACGTTTATAGCCTATAAATATGATTTGATC
CAAAACGTATCCGCATGGCTGCAAGGGGATTTTTCTCTTATTGTTCAGGGACGTTATGAACTACTCTATGTGAGTGTTCC
TCTATTGATCATCGCGTATTTATATGCTGACCGCTTTACAGTGGCTGGTATGGGTGAGAGCTTTGCCGTCAATTTAGGTT
TAACGTATAAACGTGTCATGGCAGTTGGTTTGGTGATTGTTTCGATGATTACTTCTGTAACGATTTTGACTGTTGGCATG
CTGCCATTCCTTGGCTTAATCATTCCGAATATTGTATCGATCTACCGAGGGGATCACTTGAAAAAGAGCCTGCCGCATAC
GGCTTTATTAGGGGCCATTTTTGTGCTCATATGTGATGTACTCGGACGGGTGATCATTTATCCATATGAAATATCTGTCG
GTCTTATGGTCGGCATTATTGGAAGTGCGATCTTCCTGTACATGTTATTAAGGAGGAAGCGCTATGCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52

94.937

0.494

Multiple sequence alignment