Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   VT48_RS04105 Genome accession   NZ_CP011150
Coordinates   835594..836385 (+) Length   263 a.a.
NCBI ID   WP_046342997.1    Uniprot ID   -
Organism   Bacillus altitudinis strain W3     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 830594..841385
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VT48_RS04075 (VT48_04075) - 830681..831229 (+) 549 WP_008341670.1 thioredoxin family protein -
  VT48_RS04080 (VT48_04080) - 831568..832035 (+) 468 WP_007496690.1 thiol-disulfide oxidoreductase DCC family protein -
  VT48_RS04085 (VT48_04085) - 832071..833327 (-) 1257 WP_035391280.1 transcriptional regulator -
  VT48_RS04090 (VT48_04090) - 833598..834185 (+) 588 WP_024720283.1 nitroreductase -
  VT48_RS04095 (VT48_04095) - 834222..834377 (-) 156 WP_008341997.1 YfhD family protein -
  VT48_RS19160 - 834439..834549 (-) 111 WP_017358836.1 YfhE family protein -
  VT48_RS04100 (VT48_04100) - 834602..835498 (-) 897 WP_046342996.1 TIGR01777 family oxidoreductase -
  VT48_RS04105 (VT48_04105) recX 835594..836385 (+) 792 WP_046342997.1 recombination regulator RecX Regulator
  VT48_RS04110 (VT48_04110) - 836389..836703 (+) 315 WP_046342999.1 YfhH family protein -
  VT48_RS19165 - 836766..836939 (-) 174 WP_003217811.1 YpzG family protein -
  VT48_RS04115 (VT48_04115) - 836965..837114 (-) 150 WP_003217849.1 small, acid-soluble spore protein K -
  VT48_RS04120 (VT48_04120) - 837231..837503 (+) 273 WP_017366871.1 YfhJ family protein -
  VT48_RS04125 (VT48_04125) - 837805..838788 (+) 984 WP_008341983.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30645.01 Da        Isoelectric Point: 7.0789

>NTDB_id=142812 VT48_RS04105 WP_046342997.1 835594..836385(+) (recX) [Bacillus altitudinis strain W3]
MPYITKISAQKNNTERVNIFLDEKYAFSVDLDVLVQHDLKKGKELDEADIIEIQFGDAVKKGFQQAVDYLSYRMRSVKEV
TDYLTKKDIPAPAISEIIHKLKHYKYVNDLEFAEAYVSTHRKTNSKGPSVLKKELKLKGIDDDTIEQALSQYPNDLQLEE
AVKQVQKLVKKEKNRSAKEIEQRIKLQLQRKGFSFDIIDKALQEAYDGQEEEKEEEALHYMLEKAKRKVGYDGSFEKKMK
VKQFLYRKGFDLDTIDHVLDKGE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=142812 VT48_RS04105 WP_046342997.1 835594..836385(+) (recX) [Bacillus altitudinis strain W3]
ATGCCCTATATTACGAAAATCTCTGCTCAGAAAAACAATACAGAACGCGTGAACATCTTTCTTGATGAAAAGTACGCTTT
TAGCGTTGATCTAGATGTGCTCGTCCAGCATGATTTGAAAAAGGGAAAAGAGCTGGACGAAGCCGATATCATAGAGATTC
AATTCGGTGATGCAGTAAAAAAAGGATTTCAGCAGGCCGTCGATTATTTATCGTATCGGATGAGATCAGTGAAAGAAGTC
ACCGATTATTTGACGAAAAAAGACATACCAGCACCTGCTATTAGTGAAATTATACACAAATTAAAACATTATAAGTATGT
AAATGATCTTGAATTTGCAGAAGCATATGTAAGCACCCACCGAAAAACGAATAGCAAAGGCCCGTCAGTGCTAAAAAAAG
AATTAAAGCTGAAAGGCATAGACGATGACACCATCGAACAAGCACTATCGCAATATCCAAATGATTTGCAGCTAGAGGAA
GCAGTGAAGCAAGTGCAGAAGCTGGTTAAGAAAGAGAAAAACCGGTCCGCAAAAGAAATTGAACAGCGTATCAAATTGCA
GCTTCAGCGAAAAGGATTTTCATTTGATATCATTGATAAAGCCCTTCAAGAAGCCTATGATGGACAAGAAGAGGAAAAGG
AAGAAGAAGCCCTTCACTATATGCTTGAGAAGGCAAAACGCAAGGTAGGATATGACGGATCATTTGAGAAAAAAATGAAA
GTGAAGCAATTCCTTTACCGAAAAGGATTTGATCTTGATACAATTGATCATGTTTTAGACAAAGGGGAATGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

63.498

100

0.635

Multiple sequence alignment