Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   VT48_RS01810 Genome accession   NZ_CP011150
Coordinates   342239..342667 (-) Length   142 a.a.
NCBI ID   WP_007498233.1    Uniprot ID   A0AAU7FLT6
Organism   Bacillus altitudinis strain W3     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 337239..347667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VT48_RS01780 (VT48_01780) - 337383..337712 (+) 330 WP_017366586.1 YckD family protein -
  VT48_RS01785 (VT48_01785) - 337759..338523 (-) 765 WP_046342598.1 MBL fold metallo-hydrolase -
  VT48_RS01790 (VT48_01790) - 338639..339058 (+) 420 WP_008347846.1 Lrp/AsnC family transcriptional regulator -
  VT48_RS01795 (VT48_01795) - 339083..339889 (+) 807 WP_025206721.1 aminoglycoside N(3)-acetyltransferase -
  VT48_RS01800 (VT48_01800) comJ 339891..340277 (-) 387 WP_017366590.1 competence protein ComJ -
  VT48_RS01805 (VT48_01805) - 340415..342112 (-) 1698 WP_035390503.1 methyl-accepting chemotaxis protein -
  VT48_RS01810 (VT48_01810) nucA/comI 342239..342667 (-) 429 WP_007498233.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  VT48_RS01820 (VT48_01820) - 343036..345105 (+) 2070 WP_046342601.1 hydantoinase/oxoprolinase family protein -
  VT48_RS01825 (VT48_01825) - 345095..347080 (+) 1986 WP_046342603.1 hydantoinase B/oxoprolinase family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15926.90 Da        Isoelectric Point: 6.4881

>NTDB_id=142809 VT48_RS01810 WP_007498233.1 342239..342667(-) (nucA/comI) [Bacillus altitudinis strain W3]
MKLLKTILLLLLIVIGIATGYVQLGQHKQETTNSSYDKTIHFPSDRYPETAKHIEEAIDEGHSSICTIDRKNSDEQRDKS
LHGIPTKRGYDRDEWPMAMCKEGGAGASVKYVRPSDNRGAGSWVSHQLSDDPDGTRIQFIIE

Nucleotide


Download         Length: 429 bp        

>NTDB_id=142809 VT48_RS01810 WP_007498233.1 342239..342667(-) (nucA/comI) [Bacillus altitudinis strain W3]
ATGAAACTTCTTAAAACCATTCTCTTGCTTTTATTGATTGTCATTGGTATAGCGACAGGCTATGTCCAACTAGGGCAACA
TAAACAAGAGACGACAAACTCTTCTTATGACAAAACCATTCACTTTCCATCAGATCGATATCCAGAAACCGCGAAGCACA
TAGAAGAAGCTATTGACGAAGGTCATTCTTCCATTTGCACCATTGATCGAAAAAATAGTGATGAGCAAAGAGACAAATCA
CTTCATGGCATTCCAACAAAGCGTGGTTATGATCGTGATGAATGGCCAATGGCGATGTGTAAAGAAGGTGGAGCAGGGGC
TTCTGTCAAATATGTACGTCCTTCGGATAATAGGGGGGCAGGCTCTTGGGTAAGTCATCAATTATCAGATGATCCTGATG
GCACAAGAATCCAATTTATTATCGAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(46-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

68.224

75.352

0.514

Multiple sequence alignment