Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   FORC13_RS26515 Genome accession   NZ_CP011145
Coordinates   5098126..5099475 (-) Length   449 a.a.
NCBI ID   WP_059304233.1    Uniprot ID   -
Organism   Bacillus cereus strain FORC_013     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5093126..5104475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC13_RS26480 (FORC13_5122) - 5093294..5093989 (-) 696 WP_059304232.1 hypothetical protein -
  FORC13_RS26485 (FORC13_5123) - 5093976..5094764 (-) 789 WP_000120052.1 hypothetical protein -
  FORC13_RS26490 (FORC13_5124) - 5094792..5095361 (-) 570 WP_001211060.1 hypothetical protein -
  FORC13_RS26495 (FORC13_5125) - 5095479..5095961 (-) 483 WP_000023374.1 hypothetical protein -
  FORC13_RS26500 (FORC13_5126) raiA 5096233..5096775 (-) 543 WP_000671185.1 ribosome-associated translation inhibitor RaiA -
  FORC13_RS26505 (FORC13_5127) cspC 5097098..5097295 (-) 198 WP_001990088.1 cold shock protein CspC -
  FORC13_RS26510 (FORC13_5128) - 5097422..5098126 (-) 705 WP_033693505.1 ComF family protein -
  FORC13_RS26515 (FORC13_5129) comFA 5098126..5099475 (-) 1350 WP_059304233.1 ATP-dependent helicase ComFA Machinery gene
  FORC13_RS26520 (FORC13_5130) - 5099603..5101015 (-) 1413 WP_000499481.1 C40 family peptidase -
  FORC13_RS26525 (FORC13_5131) - 5101164..5101478 (-) 315 WP_000400857.1 helix-turn-helix domain-containing protein -
  FORC13_RS26530 (FORC13_5132) - 5101651..5102493 (-) 843 WP_000684725.1 DegV family protein -
  FORC13_RS26535 (FORC13_5133) - 5102730..5103365 (+) 636 WP_000926669.1 YigZ family protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 51123.98 Da        Isoelectric Point: 9.9515

>NTDB_id=142755 FORC13_RS26515 WP_059304233.1 5098126..5099475(-) (comFA) [Bacillus cereus strain FORC_013]
MVAGKQLLLDELSSDLQRELNDLKKKGEVVCVQGVKKKNSKYMCQRCGNVDRRLFASFLCKRCSKVCTYCRKCITMGRVS
ECAVLVRGIAERKREKNSNLLQWNGTLSTGQNLAVQGVIEAIKQKESFFIWAVCGAGKTEMLFYGINEALQKGERVCIAT
PRTDVVLELAPRLQEVFPYIKVAALYGGSVDKEKDAVLVVATTHQLLRYYRAFHVIVVDEIDAFPYCADQMLQYAVKQAM
KERAARIYLTATPDETWKRKFRKGEQKGVIVSGRYHRHPLPVPLFCWCGNWKKSLIHKRIPRVLLQWLKMYLNKKYPVFL
FVPHVRYIEEISSLLKSLHNKVEGVHAEDPMRKEKVAAFRKGEIPLLVTTTILERGVTVKNLQVAVLGAEEEIFSESALV
QIAGRAGRSFEAPYGEVIYFHYGKTEAMVRAKKHIQGMNKNAKEQGLID

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=142755 FORC13_RS26515 WP_059304233.1 5098126..5099475(-) (comFA) [Bacillus cereus strain FORC_013]
ATGGTAGCGGGGAAACAGTTGCTATTAGACGAACTTTCTTCAGATTTACAGAGGGAATTAAATGATTTAAAAAAGAAGGG
AGAGGTCGTGTGTGTACAAGGTGTAAAAAAGAAGAATTCTAAATATATGTGCCAACGCTGTGGAAATGTAGATCGGCGGC
TATTTGCGTCGTTTTTATGTAAAAGGTGCAGTAAAGTGTGCACATATTGCCGGAAGTGTATAACGATGGGGAGAGTAAGT
GAATGTGCTGTACTTGTTCGCGGGATTGCTGAAAGAAAGAGAGAAAAGAATTCAAATTTGTTACAGTGGAACGGGACGTT
GTCTACTGGCCAGAATTTGGCGGTGCAAGGAGTTATAGAGGCTATTAAGCAAAAAGAATCATTTTTTATTTGGGCTGTAT
GCGGGGCTGGGAAAACAGAGATGTTGTTTTACGGTATTAACGAAGCGCTTCAAAAAGGAGAAAGAGTTTGTATCGCAACG
CCAAGAACGGATGTTGTTTTGGAATTAGCACCGAGATTACAAGAAGTATTTCCATATATAAAGGTAGCGGCTTTATATGG
AGGGAGTGTAGATAAAGAAAAAGATGCAGTACTAGTCGTTGCGACCACGCATCAATTATTACGTTATTATAGGGCGTTTC
ATGTCATAGTTGTAGATGAGATAGATGCTTTTCCATATTGTGCAGATCAAATGTTACAGTACGCGGTAAAACAAGCGATG
AAAGAAAGAGCGGCGCGTATTTATTTAACTGCGACTCCAGATGAAACGTGGAAGCGAAAATTTAGAAAAGGTGAACAAAA
AGGTGTTATTGTTTCTGGACGATATCATCGTCATCCTTTGCCAGTTCCTTTATTTTGTTGGTGCGGGAATTGGAAAAAAA
GCCTCATTCATAAAAGAATTCCTCGAGTTTTACTACAATGGTTAAAGATGTACTTAAACAAAAAGTATCCTGTTTTTTTA
TTCGTTCCCCATGTACGATATATAGAAGAAATAAGCTCGTTATTGAAATCATTGCATAATAAAGTTGAAGGTGTACATGC
AGAAGATCCGATGAGAAAAGAGAAAGTCGCAGCATTCAGAAAGGGAGAAATCCCATTATTAGTTACAACGACAATTTTAG
AGCGAGGCGTAACGGTGAAAAATTTGCAAGTTGCAGTTTTAGGGGCGGAAGAAGAAATATTTTCAGAAAGTGCGCTCGTA
CAAATTGCGGGCCGAGCAGGGCGGAGCTTTGAAGCACCATATGGAGAGGTCATTTATTTTCACTATGGCAAGACAGAGGC
GATGGTGCGCGCGAAAAAACATATTCAAGGTATGAATAAAAATGCGAAAGAACAAGGATTGATCGATTAA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(313-408)

Type III restriction enzyme, res subunit (ResIII)

(107-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

50.909

97.996

0.499

Multiple sequence alignment