Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   FORC13_RS16795 Genome accession   NZ_CP011145
Coordinates   3217834..3218121 (-) Length   95 a.a.
NCBI ID   WP_000648324.1    Uniprot ID   -
Organism   Bacillus cereus strain FORC_013     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3212834..3223121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC13_RS16765 (FORC13_3241) - 3213045..3213392 (+) 348 WP_000426317.1 DUF4257 domain-containing protein -
  FORC13_RS16770 (FORC13_3242) - 3213477..3213701 (+) 225 WP_000162602.1 hypothetical protein -
  FORC13_RS16775 (FORC13_3243) - 3213996..3215171 (-) 1176 WP_016124469.1 MFS transporter -
  FORC13_RS16780 (FORC13_3244) - 3215219..3216154 (-) 936 WP_059303915.1 aldo/keto reductase -
  FORC13_RS16785 (FORC13_3245) - 3216261..3216569 (+) 309 WP_001259906.1 helix-turn-helix transcriptional regulator -
  FORC13_RS16790 (FORC13_3246) - 3216611..3217558 (-) 948 WP_000099748.1 serine protease -
  FORC13_RS16795 (FORC13_3247) abrB 3217834..3218121 (-) 288 WP_000648324.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  FORC13_RS16800 (FORC13_3248) - 3218239..3220119 (-) 1881 WP_059303916.1 ABC transporter permease -
  FORC13_RS16805 (FORC13_3249) nadE 3220389..3221207 (+) 819 WP_000174904.1 ammonia-dependent NAD(+) synthetase -
  FORC13_RS16810 (FORC13_3250) - 3221257..3221718 (-) 462 WP_000024992.1 NUDIX hydrolase -
  FORC13_RS16815 (FORC13_3251) - 3221750..3221947 (-) 198 WP_001048104.1 DUF4083 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10587.32 Da        Isoelectric Point: 4.8408

>NTDB_id=142736 FORC13_RS16795 WP_000648324.1 3217834..3218121(-) (abrB) [Bacillus cereus strain FORC_013]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEADKIILQKYQPYNACQITGDVSEQNISLANGNITVGIEGAE
YLVKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=142736 FORC13_RS16795 WP_000648324.1 3217834..3218121(-) (abrB) [Bacillus cereus strain FORC_013]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATCCCTAAAGAATTACGCGATGTATTGGG
AATACAAATCAAATCACCGCTTGAAATTTTTGTAGAAGCAGATAAAATCATTTTACAAAAATATCAACCTTACAATGCTT
GCCAAATCACAGGTGATGTTTCAGAGCAGAACATATCATTAGCAAATGGAAATATTACTGTTGGGATAGAGGGAGCGGAA
TATTTAGTAAAAGAAATAGAAAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.556

94.737

0.526

Multiple sequence alignment