Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   AVR68_RS18175 Genome accession   NZ_CP013835
Coordinates   3389112..3389588 (+) Length   158 a.a.
NCBI ID   WP_001186726.1    Uniprot ID   -
Organism   Escherichia coli strain JJ2434     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3384112..3394588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVR68_RS18150 (AVR68_17025) - 3385661..3386794 (+) 1134 Protein_3310 hypothetical protein -
  AVR68_RS18155 (AVR68_17030) - 3386870..3387325 (+) 456 WP_000581502.1 IrmA family protein -
  AVR68_RS18160 (AVR68_17035) - 3387404..3387637 (+) 234 WP_000902034.1 DUF905 family protein -
  AVR68_RS18165 (AVR68_17040) - 3387738..3388556 (+) 819 WP_001234620.1 DUF932 domain-containing protein -
  AVR68_RS18170 (AVR68_17045) - 3388611..3389096 (+) 486 WP_000849565.1 antirestriction protein -
  AVR68_RS18175 (AVR68_17050) radC 3389112..3389588 (+) 477 WP_001186726.1 JAB domain-containing protein Machinery gene
  AVR68_RS18180 (AVR68_17055) - 3389651..3389872 (+) 222 WP_000692329.1 DUF987 domain-containing protein -
  AVR68_RS18185 (AVR68_17060) - 3389891..3390535 (+) 645 WP_000094916.1 hypothetical protein -
  AVR68_RS18190 (AVR68_17065) - 3390585..3390953 (+) 369 WP_001305076.1 type IV toxin-antitoxin system YeeU family antitoxin -
  AVR68_RS18195 (AVR68_17070) - 3391042..3391419 (+) 378 WP_000854690.1 TA system toxin CbtA family protein -
  AVR68_RS18200 (AVR68_17075) - 3391416..3391904 (+) 489 WP_000761699.1 DUF5983 family protein -
  AVR68_RS18205 (AVR68_17080) - 3391921..3392118 (+) 198 WP_000839293.1 DUF957 domain-containing protein -
  AVR68_RS18210 (AVR68_17085) - 3392203..3393048 (+) 846 WP_001529401.1 DUF4942 domain-containing protein -
  AVR68_RS18215 (AVR68_17090) - 3393117..3393512 (+) 396 WP_000208384.1 DUF6088 family protein -
  AVR68_RS18220 (AVR68_17095) - 3393505..3394438 (+) 934 Protein_3324 nucleotidyl transferase AbiEii/AbiGii toxin family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17673.32 Da        Isoelectric Point: 7.2020

>NTDB_id=142679 AVR68_RS18175 WP_001186726.1 3389112..3389588(+) (radC) [Escherichia coli strain JJ2434]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=142679 AVR68_RS18175 WP_001186726.1 3389112..3389588(+) (radC) [Escherichia coli strain JJ2434]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCTCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392