Detailed information NTG0142675

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AVR68_RS16520
• Genome accession: NZ_CP013835
• Coordinates: 3041018..3042010 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain JJ2434
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3036018..3047010

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AVR68_RS16500 (AVR68_15380)	ygbM	3036657..3037432 (+)	776	Protein_2993	HPr family phosphocarrier protein	-
AVR68_RS16505 (AVR68_15385)	ygbN	3037521..3038885 (+)	1365	WP_000104433.1	GntP family transporter	-
AVR68_RS16510 (AVR68_15390)	-	3039028..3040071 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
AVR68_RS16515 (AVR68_15395)	-	3040296..3040847 (+)	552	WP_001179444.1	flavodoxin family protein	-
AVR68_RS16520 (AVR68_15400)	rpoS	3041018..3042010 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
AVR68_RS16525 (AVR68_15405)	nlpD	3042073..3043167 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
AVR68_RS16530 (AVR68_15410)	pcm	3043352..3043978 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
AVR68_RS16535 (AVR68_15415)	surE	3043972..3044733 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
AVR68_RS16540 (AVR68_15420)	truD	3044714..3045763 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
AVR68_RS16545 (AVR68_15425)	ispF	3045760..3046239 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AVR68_RS16550 (AVR68_15430)	ispD	3046239..3046949 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=142675 AVR68_RS16520 WP_000081550.1 3041018..3042010(-) (rpoS) [Escherichia coli strain JJ2434]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=142675 AVR68_RS16520 WP_000081550.1 3041018..3042010(-) (rpoS) [Escherichia coli strain JJ2434]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715