Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   F384_RS04575 Genome accession   NZ_CP011132
Coordinates   1025326..1025955 (+) Length   209 a.a.
NCBI ID   WP_046478746.1    Uniprot ID   A0A0F6REQ4
Organism   Citrobacter amalonaticus Y19     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1020326..1030955
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F384_RS04555 (F384_04555) - 1020711..1022471 (-) 1761 WP_046478740.1 AAA family ATPase -
  F384_RS04560 (F384_04560) matP 1022657..1023109 (+) 453 WP_046478741.1 macrodomain Ter protein MatP -
  F384_RS04565 (F384_04565) ompA 1023187..1024242 (-) 1056 WP_052746997.1 porin OmpA -
  F384_RS04570 (F384_04570) sulA 1024599..1025108 (-) 510 WP_046478744.1 SOS-induced cell division inhibitor SulA -
  F384_RS04575 (F384_04575) sxy/tfoX 1025326..1025955 (+) 630 WP_046478746.1 TfoX/Sxy family DNA transformation protein Regulator
  F384_RS04580 (F384_04580) yccS 1025909..1028071 (-) 2163 WP_046478748.1 YccS family putative transporter -
  F384_RS04585 (F384_04585) - 1028078..1028536 (-) 459 WP_046478749.1 YccF domain-containing protein -
  F384_RS04590 (F384_04590) helD 1028660..1030714 (+) 2055 WP_046478751.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24096.98 Da        Isoelectric Point: 9.6160

>NTDB_id=142643 F384_RS04575 WP_046478746.1 1025326..1025955(+) (sxy/tfoX) [Citrobacter amalonaticus Y19]
MKVHSYGRIYKSQEYLSSLGTIHFRSLFGSYSLTIKNTVFAMVANGELYLRACEQSVQYCVQHSPVWLTFLKRGRPVMLN
YYQVDDSLWRDQQQLIQLSKFSLDAALQEKLTRSSQQRLKDLPNMTFHLESLLNEAGIYDVATLRMLGAKMCWLRLRQIN
KSITDKVLFNLEGAIYGIHEAALPATRRQELALWVKSLSPAPMSVEKIE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=142643 F384_RS04575 WP_046478746.1 1025326..1025955(+) (sxy/tfoX) [Citrobacter amalonaticus Y19]
ATGAAAGTACACTCCTATGGCAGGATCTATAAATCACAGGAATATTTATCTTCTCTGGGGACGATTCATTTCCGTTCACT
GTTCGGTAGCTACAGTCTGACTATCAAGAATACCGTCTTTGCGATGGTCGCGAATGGTGAGCTTTATCTGCGTGCCTGTG
AGCAAAGCGTACAGTATTGCGTGCAACATTCCCCTGTCTGGCTGACTTTTCTCAAACGCGGACGCCCGGTGATGCTCAAC
TATTATCAGGTCGATGACAGTCTGTGGCGCGACCAGCAGCAGTTGATCCAGTTATCGAAGTTTTCACTGGATGCCGCGTT
GCAGGAGAAGTTGACCCGCAGTTCACAGCAGCGGCTTAAGGATCTCCCAAATATGACCTTTCATCTGGAGAGTTTACTGA
ATGAAGCGGGGATCTACGACGTCGCCACCTTGCGAATGCTGGGGGCCAAAATGTGCTGGCTGCGGCTTCGACAGATTAAC
AAGTCCATCACCGACAAGGTTTTGTTTAATCTTGAAGGCGCCATTTATGGCATTCATGAAGCCGCGCTCCCGGCGACACG
CCGCCAGGAGCTTGCTTTGTGGGTTAAGTCGCTTTCGCCTGCGCCGATGTCAGTGGAGAAGATTGAGTGA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F6REQ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

71.5

95.694

0.684

Multiple sequence alignment