Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   AS200_RS36160 Genome accession   NZ_CP013743
Coordinates   8099916..8101271 (+) Length   451 a.a.
NCBI ID   WP_058926496.1    Uniprot ID   -
Organism   Streptomyces sp. CdTB01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 8094916..8106271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AS200_RS36135 (AS200_36135) - 8095539..8096165 (-) 627 WP_058926491.1 response regulator transcription factor -
  AS200_RS36140 (AS200_36140) - 8096162..8097400 (-) 1239 WP_058926492.1 sensor histidine kinase -
  AS200_RS36145 (AS200_36145) - 8097358..8098203 (-) 846 WP_058926493.1 ABC transporter permease -
  AS200_RS36150 (AS200_36150) - 8098200..8099066 (-) 867 WP_058926494.1 ABC transporter ATP-binding protein -
  AS200_RS36155 (AS200_36155) - 8099213..8099872 (+) 660 WP_058926495.1 vitamin K epoxide reductase family protein -
  AS200_RS36160 (AS200_36160) rarA 8099916..8101271 (+) 1356 WP_058926496.1 replication-associated recombination protein A Machinery gene
  AS200_RS36165 (AS200_36165) rpsD 8101568..8102182 (+) 615 WP_058926497.1 30S ribosomal protein S4 -
  AS200_RS36170 (AS200_36170) - 8102207..8104360 (-) 2154 WP_058926498.1 AAA family ATPase -
  AS200_RS36175 (AS200_36175) - 8104514..8104957 (+) 444 WP_107416189.1 DUF948 domain-containing protein -
  AS200_RS36180 (AS200_36180) - 8104967..8105320 (+) 354 WP_058926499.1 hypothetical protein -

Sequence

Protein


Download         Length: 451 a.a.        Molecular weight: 48311.66 Da        Isoelectric Point: 6.1508

>NTDB_id=142452 AS200_RS36160 WP_058926496.1 8099916..8101271(+) (rarA) [Streptomyces sp. CdTB01]
MEPDLFTAAAEERQEKDPSGSPLAVRMRPRTLDEVVGQQHLLKPGSPLRRLVGEGAGGPAGPSSVILWGPPGTGKTTLAY
VVSKATNKRFVELSAITAGVKEVRAVIDGARRATGGYGKETVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYF
SVISPLLSRSLLLTLEPLTDDDVRGLLRRALSDERGLKDAVTLPEDTEDHFLRIAGGDARRALTALEAAAGAALDKGETE
ISLTTLEETVDRAAVKYDRDGDQHYDVASALIKSIRGSDVDAALHYLARMIEAGEDPRFIARRLMISASEDIGLADPNAL
PIAVAAAQAVAMIGFPEAALTLSHATIALALAPKSNAATTAIGAALDDVRKGLAGAVPPHLRDGHYKGAAKLGHAQGYVY
PHDLAEGIAEQQYAPDALKDREYYTPTRHGAEARYADAVEWTRTRLGRKRS

Nucleotide


Download         Length: 1356 bp        

>NTDB_id=142452 AS200_RS36160 WP_058926496.1 8099916..8101271(+) (rarA) [Streptomyces sp. CdTB01]
GTGGAGCCCGACCTGTTCACCGCAGCCGCAGAAGAACGCCAGGAGAAGGATCCGTCAGGAAGCCCCCTGGCGGTGCGCAT
GCGCCCGCGCACCCTCGACGAGGTGGTGGGCCAGCAGCACCTGCTCAAGCCCGGCTCGCCCCTGCGCCGCCTGGTCGGCG
AGGGAGCGGGCGGCCCGGCGGGCCCCTCCTCGGTCATCCTGTGGGGCCCGCCCGGCACCGGCAAGACGACCCTCGCGTAC
GTCGTCTCCAAGGCCACCAACAAGCGCTTCGTCGAACTGTCGGCGATCACCGCGGGCGTCAAGGAGGTCCGCGCGGTCAT
CGACGGCGCCCGCCGCGCCACCGGCGGATACGGCAAGGAGACCGTCCTCTTCCTGGACGAGATCCACCGCTTCAGCAAGG
CCCAGCAGGACTCCCTGCTGCCCGCGGTGGAGAACCGCTGGGTCACCCTGATCGCGGCGACCACGGAGAACCCGTACTTC
TCGGTGATCTCCCCGCTGCTGTCCCGCTCCCTCCTGCTCACCCTCGAACCCCTCACCGACGACGACGTCCGCGGCCTGCT
CAGGCGGGCGCTGAGCGACGAGCGCGGCCTGAAGGACGCCGTCACCCTCCCCGAGGACACCGAGGACCACTTCCTGCGCA
TCGCCGGCGGAGACGCCCGCCGCGCCCTGACCGCCCTGGAGGCCGCTGCCGGGGCCGCCCTGGACAAGGGCGAGACCGAG
ATCTCCCTGACCACCCTGGAGGAGACCGTCGACCGGGCGGCGGTCAAGTACGACCGCGACGGCGACCAGCACTACGACGT
CGCCAGCGCCCTGATCAAGTCCATCAGGGGCTCGGACGTGGACGCCGCCCTGCACTACCTGGCCCGCATGATCGAGGCCG
GCGAGGACCCCCGGTTCATCGCCCGCCGGCTGATGATCTCCGCGAGCGAGGACATCGGGCTCGCCGACCCGAACGCCCTG
CCGATCGCCGTGGCCGCCGCCCAGGCCGTCGCCATGATCGGCTTCCCCGAGGCCGCCCTCACCCTCAGCCACGCCACCAT
CGCCCTCGCCCTGGCTCCGAAGTCCAACGCCGCGACGACCGCGATCGGCGCCGCCCTGGACGACGTACGCAAGGGACTGG
CGGGAGCCGTGCCGCCGCACCTCAGGGACGGGCACTACAAGGGCGCCGCCAAGCTCGGCCACGCGCAGGGGTACGTGTAT
CCGCACGACCTGGCCGAGGGCATCGCCGAGCAGCAGTACGCCCCGGACGCCCTCAAGGACCGCGAGTACTACACCCCGAC
CCGGCACGGGGCGGAGGCGCGGTACGCGGACGCCGTGGAGTGGACCCGGACCCGCCTCGGTCGGAAGCGGTCCTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(199-276)

MgsA AAA+ ATPase C terminal (MgsA_C)

(277-441)

ATPase family associated with various cellular activities (AAA) (AAA)

(65-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

44.342

96.009

0.426

Multiple sequence alignment