Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   AS200_RS26310 Genome accession   NZ_CP013743
Coordinates   5886343..5887341 (+) Length   332 a.a.
NCBI ID   WP_058924787.1    Uniprot ID   -
Organism   Streptomyces sp. CdTB01     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 5881343..5892341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AS200_RS26285 (AS200_26285) - 5881643..5882302 (+) 660 WP_107416137.1 TetR/AcrR family transcriptional regulator -
  AS200_RS26290 (AS200_26290) - 5882475..5884016 (+) 1542 WP_058924783.1 MFS transporter -
  AS200_RS26295 (AS200_26295) - 5884123..5884662 (-) 540 WP_058924784.1 MarR family transcriptional regulator -
  AS200_RS26300 (AS200_26300) - 5884823..5885614 (+) 792 WP_058924785.1 class III extradiol ring-cleavage dioxygenase -
  AS200_RS26305 (AS200_26305) - 5885616..5886149 (-) 534 WP_058924786.1 GNAT family N-acetyltransferase -
  AS200_RS26310 (AS200_26310) rpoS 5886343..5887341 (+) 999 WP_058924787.1 sigma-70 family RNA polymerase sigma factor Regulator
  AS200_RS26315 (AS200_26315) - 5888218..5888973 (+) 756 WP_239015286.1 TetR family transcriptional regulator -
  AS200_RS26320 (AS200_26320) - 5889023..5889988 (-) 966 WP_058924789.1 YafY family protein -
  AS200_RS26325 (AS200_26325) - 5890051..5891595 (+) 1545 WP_058924790.1 MFS transporter -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 37251.00 Da        Isoelectric Point: 5.1447

>NTDB_id=142428 AS200_RS26310 WP_058924787.1 5886343..5887341(+) (rpoS) [Streptomyces sp. CdTB01]
MATRAVARRQSASGETGNAARSVRAHGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQIIEAGVFARQVLDGYEEAKAE
ATREELEALVDQGERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQAI
TRSIADQSRTIRLPVHLVEELGRIRRVQREFNREHGRDPEPAEIAAELGSNADRVTDVLDWARDPVSLNMPVDDQGETQF
GDLLEDTSAVSPEQSVLTLLRSEELDDLIGRLDPRTASIIKMRYGIEDGRERTLTEVGKEHGLTRERIRQIEKHALLELK
KLARDTGFEAAA

Nucleotide


Download         Length: 999 bp        

>NTDB_id=142428 AS200_RS26310 WP_058924787.1 5886343..5887341(+) (rpoS) [Streptomyces sp. CdTB01]
ATGGCAACCCGTGCCGTCGCCCGTCGTCAGTCCGCCTCCGGCGAGACCGGCAACGCGGCACGCAGTGTTCGCGCTCATGG
CGGCGAGATCGCAGACCGCGACCTGGTCGGCATGTACCTCGACGAGATAGCGCGCACACCGCTGCTCGACGCCGCCAAGG
AAGTCGAGCTGTCCCAGATCATCGAGGCGGGTGTGTTCGCGCGACAGGTTCTCGACGGGTACGAGGAGGCCAAGGCCGAG
GCCACCCGCGAGGAGCTCGAAGCCCTCGTCGACCAGGGTGAGCGCGCCAAGGACGTCTTCATCCGTTCCAACCTCCGTCT
GGTCGTGGCCGTGGCCCGCCGCTACCCCCGTAGCGGACTGCCCCTGCTGGACCTGATCCAGGAGGGCAACGCCGGTCTGG
TCCGCGCGGTCGAGAAGTTCGACTACCGCAAGGGCTTCAAGTTCTCCACGTACGCGACCTGGTGGATCCGTCAGGCCATC
ACCCGCTCGATAGCCGATCAGTCCCGCACCATCCGGCTGCCCGTCCACCTGGTGGAGGAGCTGGGCCGCATCCGCCGTGT
GCAGCGCGAGTTCAACCGCGAGCACGGCCGCGACCCGGAGCCCGCGGAGATCGCCGCCGAGCTCGGTTCCAACGCCGACC
GCGTCACCGACGTCCTGGACTGGGCCCGCGACCCGGTCTCCCTGAACATGCCGGTGGACGACCAGGGCGAGACCCAGTTC
GGCGACCTGCTCGAGGACACCTCCGCGGTCTCCCCGGAGCAGTCGGTCCTCACCCTGCTGCGCAGCGAGGAACTGGACGA
CCTCATCGGCCGCCTCGACCCGCGCACGGCCTCCATCATCAAGATGCGCTACGGCATCGAGGACGGCCGCGAGCGCACGC
TGACCGAGGTCGGCAAGGAGCACGGCCTGACGCGTGAGCGCATCCGGCAGATCGAGAAGCACGCGCTGCTGGAGCTGAAG
AAGCTGGCCCGCGACACCGGCTTCGAGGCGGCGGCGTAA

Domains

Predicted by InterProScan.

Sigma-70, region 4 (Sigma70_r4)

(269-321)

Sigma-70 region 2 (Sigma70_r2)

(100-169)

Sigma-70 region 3 (Sigma70_r3)

(179-255)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(34-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40.468

90.06

0.364

Multiple sequence alignment