Detailed information    

insolico Bioinformatically predicted

Overview


Name   disA   Type   Machinery gene
Locus tag   AS200_RS21570 Genome accession   NZ_CP013743
Coordinates   4831908..4833032 (+) Length   374 a.a.
NCBI ID   WP_058923984.1    Uniprot ID   -
Organism   Streptomyces sp. CdTB01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 4826908..4838032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AS200_RS21555 (AS200_21555) - 4827035..4827919 (+) 885 WP_079078025.1 hypothetical protein -
  AS200_RS21560 (AS200_21560) - 4828512..4830200 (-) 1689 WP_058923982.1 sigma-70 family RNA polymerase sigma factor -
  AS200_RS21565 (AS200_21565) radA 4830418..4831827 (+) 1410 WP_058923983.1 DNA repair protein RadA Machinery gene
  AS200_RS21570 (AS200_21570) disA 4831908..4833032 (+) 1125 WP_058923984.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  AS200_RS21575 (AS200_21575) - 4833056..4833886 (-) 831 WP_079078026.1 hypothetical protein -
  AS200_RS21580 (AS200_21580) - 4834180..4835127 (+) 948 WP_058923985.1 A/G-specific adenine glycosylase -
  AS200_RS21585 (AS200_21585) - 4835354..4835893 (+) 540 WP_058923986.1 SigE family RNA polymerase sigma factor -
  AS200_RS21590 (AS200_21590) - 4835881..4836534 (+) 654 WP_058923987.1 hypothetical protein -
  AS200_RS21595 (AS200_21595) cseB 4836643..4837347 (+) 705 WP_058923988.1 two-component system response regulator CseB -

Sequence


Protein


Download         Length: 374 a.a.        Molecular weight: 40134.95 Da        Isoelectric Point: 4.9201

>NTDB_id=142415 AS200_RS21570 WP_058923984.1 4831908..4833032(+) (disA) [Streptomyces sp. CdTB01]
MAANDRAAAPGKSGGSSGADGLMRASLSAVAPGTAMRDGLERVLRGNTGGLIVLGFDKTVEAMCTGGFVLDVEFTATRLR
ELCKLDGGIVLSSDLSKILRAGVQFVPDAMIPTEETGTRHRTADRVSKQVGFPVVSVSQSMRLIALYVDGQRRVLEDSAA
ILSRANQALATLERYKLRLDEVAGTLSALEIEDLVTVRDVSAVAQRLEMVRRIATEIAEYVVELGTDGRLLALQLDELIA
GVEPERELVVRDYVPEPTAKRSRTVDEALYELDALTHAELLELTTVAKALGYTGSPEALDSAVSPRGFRLLAKVPRLPGA
IIDRLVEHFGGLQKLLAASVDDLQTVDGVGEARARSVREGLSRLAESSILERYV

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=142415 AS200_RS21570 WP_058923984.1 4831908..4833032(+) (disA) [Streptomyces sp. CdTB01]
GTGGCAGCCAACGACCGGGCGGCAGCTCCCGGAAAGTCCGGCGGGAGTTCCGGTGCCGATGGCCTGATGCGCGCCTCACT
GAGCGCCGTGGCACCCGGCACGGCGATGCGCGACGGGCTGGAGCGTGTGCTCCGCGGAAACACCGGCGGACTCATCGTGC
TCGGCTTCGACAAGACCGTCGAAGCCATGTGCACGGGCGGATTCGTGCTGGACGTCGAGTTCACGGCCACGCGCCTGCGC
GAGCTGTGCAAGCTGGACGGCGGCATCGTGCTCTCCTCCGACCTGTCGAAGATCCTCAGGGCGGGCGTCCAGTTCGTACC
GGACGCGATGATCCCCACGGAGGAGACGGGCACCCGCCACCGCACCGCCGACCGCGTCTCGAAGCAGGTCGGCTTCCCGG
TGGTCTCGGTGTCCCAGTCGATGCGCCTGATCGCCCTCTACGTGGACGGCCAGCGCAGGGTCCTGGAGGACTCCGCGGCG
ATCCTCTCCCGTGCCAACCAGGCCCTGGCGACCCTGGAGCGCTACAAGCTCCGCCTGGACGAGGTCGCGGGCACCCTCTC
GGCCCTGGAGATCGAGGACCTCGTCACCGTCCGGGACGTCTCCGCGGTGGCCCAGCGCCTGGAGATGGTCCGCCGCATCG
CCACCGAAATCGCCGAGTACGTGGTGGAGCTGGGCACCGACGGCCGTCTCCTCGCCCTCCAGCTGGACGAGTTGATCGCC
GGCGTCGAGCCCGAGCGCGAGCTGGTGGTGCGCGACTACGTCCCCGAACCGACCGCCAAGCGCTCCCGCACCGTCGACGA
GGCCCTCTACGAACTCGACGCGCTCACCCACGCCGAACTCCTCGAACTGACCACGGTGGCGAAGGCGTTGGGCTACACGG
GCTCCCCGGAGGCCCTGGACTCGGCGGTCTCGCCGCGCGGCTTCCGCCTGCTGGCCAAGGTCCCCCGGCTCCCCGGCGCG
ATCATCGACCGCCTGGTGGAGCACTTCGGCGGCCTGCAGAAGCTGCTCGCCGCGAGCGTGGACGACCTGCAGACGGTGGA
CGGCGTGGGCGAGGCCCGTGCCCGCAGCGTCCGCGAGGGCCTGTCCCGCCTGGCCGAGAGCTCGATCCTGGAACGCTACG
TCTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  disA Bacillus subtilis subsp. subtilis str. 168

45.429

96.524

0.438