Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   VK70_RS26105 Genome accession   NZ_CP011114
Coordinates   5559860..5561227 (-) Length   455 a.a.
NCBI ID   WP_025693614.1    Uniprot ID   -
Organism   Paenibacillus durus ATCC 35681     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5554860..5566227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VK70_RS26080 (VK70_26085) ispD 5555162..5555860 (-) 699 WP_025695487.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  VK70_RS26085 (VK70_26090) - 5556171..5557259 (-) 1089 WP_025695486.1 PIN/TRAM domain-containing protein -
  VK70_RS26090 (VK70_26095) - 5557454..5557849 (+) 396 WP_025695485.1 hypothetical protein -
  VK70_RS26095 (VK70_26100) pssA 5557971..5558708 (-) 738 WP_046723998.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  VK70_RS26100 (VK70_26105) disA 5558775..5559848 (-) 1074 WP_025693615.1 DNA integrity scanning diadenylate cyclase DisA -
  VK70_RS26105 (VK70_26110) radA 5559860..5561227 (-) 1368 WP_025693614.1 DNA repair protein RadA Machinery gene
  VK70_RS26110 (VK70_26115) clpC 5561447..5563900 (-) 2454 WP_046724000.1 ATP-dependent protease ATP-binding subunit ClpC -
  VK70_RS26115 (VK70_26120) - 5563937..5565001 (-) 1065 WP_025695864.1 protein arginine kinase -
  VK70_RS26120 (VK70_26125) - 5565031..5565555 (-) 525 WP_025695865.1 UvrB/UvrC motif-containing protein -
  VK70_RS26125 (VK70_26130) - 5565585..5566046 (-) 462 WP_025695866.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49469.11 Da        Isoelectric Point: 6.5039

>NTDB_id=142397 VK70_RS26105 WP_025693614.1 5559860..5561227(-) (radA) [Paenibacillus durus ATCC 35681]
MAKTKTKFYCTECGYESPKWLGKCPGCQAWNSMVEETESVVKTQGMSTPVFHSKEKPQSIINIESDQEPRILTGIGELNR
VLGGGIVPGSLVLVGGDPGIGKSTLLLQTSHALTTQGLRVLYISGEESVRQTRLRADRLGALSSELYVLCETNMEAIEEA
IEAIQPNFLVIDSIQTVFLPEVTSAPGSVSQVRECTTRFMRIAKIRGIATVLVGHVTKEGAIAGPRMLEHMVDCVLYFEG
ERHHTYRLLRAVKNRFGSTNEIGIFEMGEIGLSEVGNPSELFLSERPLGVAGSTVVASMEGTRPVLVELQALVAATHFPS
PRRMSTGLDNQRMALIIAVLEKRMGMFLQNQDAYLNVAGGVKLDEPAIDLAVAVSIASSFRDIPTQPYDVFFGEVGLTGE
VRGVARAETRVKEAAKLGFRRVIMPEKSLKGWKHPQDIQIIGVSTVADALAVALN

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=142397 VK70_RS26105 WP_025693614.1 5559860..5561227(-) (radA) [Paenibacillus durus ATCC 35681]
ATGGCAAAGACAAAAACAAAATTTTACTGCACTGAATGCGGGTACGAGTCTCCGAAATGGCTCGGGAAATGCCCGGGATG
TCAGGCTTGGAATAGCATGGTGGAGGAAACGGAAAGCGTAGTCAAAACTCAGGGAATGAGCACTCCCGTTTTTCATAGTA
AAGAAAAGCCGCAGTCCATCATAAATATAGAAAGCGATCAGGAACCGCGCATATTGACCGGCATCGGAGAACTAAACCGG
GTGCTTGGGGGCGGGATTGTGCCGGGATCTCTAGTGCTTGTGGGAGGCGACCCGGGCATAGGGAAATCGACGCTGCTGCT
GCAGACCTCACATGCGCTGACCACGCAGGGATTGCGCGTGCTGTACATTTCAGGAGAAGAATCGGTTCGTCAGACGAGGC
TGCGGGCGGACCGGCTCGGAGCCCTGTCATCCGAGCTGTATGTGCTCTGTGAGACCAATATGGAGGCGATTGAGGAAGCG
ATTGAGGCGATTCAGCCTAATTTTCTGGTCATTGACTCCATACAGACGGTGTTTCTGCCGGAAGTGACAAGCGCGCCGGG
GAGCGTGTCGCAGGTTCGCGAATGTACGACAAGATTTATGCGGATCGCCAAGATTCGCGGCATTGCGACCGTACTGGTCG
GGCATGTTACGAAGGAAGGCGCAATCGCGGGACCCCGGATGCTGGAGCATATGGTGGACTGCGTGCTGTATTTCGAAGGC
GAGCGCCATCATACGTACCGGCTGCTGCGGGCCGTCAAGAACCGTTTCGGTTCGACGAATGAAATCGGCATTTTTGAAAT
GGGCGAAATCGGCCTGTCCGAGGTTGGCAATCCGTCTGAGCTGTTCCTTTCCGAGCGGCCCCTTGGCGTAGCGGGTTCCA
CAGTTGTAGCCAGCATGGAGGGTACGCGCCCGGTGCTGGTGGAACTGCAGGCGCTTGTCGCCGCCACGCATTTCCCCTCG
CCGAGGAGGATGTCAACCGGACTGGATAACCAAAGGATGGCGCTCATTATCGCTGTGCTGGAGAAGCGGATGGGCATGTT
CCTGCAGAATCAGGATGCCTATCTTAACGTTGCGGGCGGGGTTAAGCTGGATGAGCCGGCCATTGATCTGGCAGTCGCGG
TCAGTATTGCTTCGAGCTTCCGGGATATCCCGACCCAGCCGTACGACGTATTCTTCGGCGAGGTGGGGCTTACGGGGGAA
GTCAGAGGCGTCGCGCGCGCGGAGACGCGCGTCAAGGAAGCCGCCAAGCTGGGGTTCCGCCGGGTTATTATGCCCGAGAA
GAGCCTGAAAGGCTGGAAGCATCCGCAGGATATACAGATTATCGGGGTAAGTACCGTAGCAGACGCATTAGCGGTCGCAT
TAAATTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(345-427)

AAA domain (AAA_25)

(72-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.57

100

0.657
  radA Streptococcus mitis NCTC 12261

60

98.901

0.593
  radA Streptococcus pneumoniae Rx1

60

98.901

0.593
  radA Streptococcus pneumoniae D39

60

98.901

0.593
  radA Streptococcus pneumoniae R6

60

98.901

0.593
  radA Streptococcus pneumoniae TIGR4

60

98.901

0.593
  radA Streptococcus mitis SK321

60

98.901

0.593

Multiple sequence alignment