Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   AS200_RS13040 Genome accession   NZ_CP013743
Coordinates   2979104..2979883 (+) Length   259 a.a.
NCBI ID   WP_058922549.1    Uniprot ID   -
Organism   Streptomyces sp. CdTB01     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2974104..2984883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AS200_RS13030 (AS200_13030) - 2974869..2977775 (-) 2907 WP_058922548.1 vitamin B12-dependent ribonucleotide reductase -
  AS200_RS13035 (AS200_13035) nrdR 2977939..2978502 (-) 564 WP_058928100.1 transcriptional regulator NrdR -
  AS200_RS13040 (AS200_13040) dinR/lexA 2979104..2979883 (+) 780 WP_058922549.1 transcriptional repressor LexA Regulator
  AS200_RS13045 (AS200_13045) - 2980014..2981990 (-) 1977 WP_058922550.1 ATP-dependent DNA helicase -
  AS200_RS13050 (AS200_13050) - 2982204..2983181 (-) 978 WP_058922551.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 27989.72 Da        Isoelectric Point: 7.0666

>NTDB_id=142391 AS200_RS13040 WP_058922549.1 2979104..2979883(+) (dinR/lexA) [Streptomyces sp. CdTB01]
MTTTADSATITAQDRSQGRLEPVHAMNEAANPEAHKRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREI
GQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQGATVQPTDTAGKPAASYVPLVGRIAAGGPILAEESVED
VFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNAAYEP
IPGDDATILGKVVAVLRRV

Nucleotide


Download         Length: 780 bp        

>NTDB_id=142391 AS200_RS13040 WP_058922549.1 2979104..2979883(+) (dinR/lexA) [Streptomyces sp. CdTB01]
GTGACCACCACCGCAGACAGCGCCACCATCACTGCCCAGGACCGCTCCCAGGGCCGACTCGAGCCGGTGCATGCGATGAA
CGAAGCCGCGAACCCAGAGGCGCACAAGCGGTCCCTGCCGGGCCGACCTCCAGGGATCCGGGCCGACAGCTCCGGGCTGA
CCGACCGGCAGCGCCGGGTGATCGAGGTCATCCGGGATTCGGTGCAGCGTCGCGGCTACCCGCCGTCGATGCGGGAGATC
GGCCAGGCGGTCGGCCTGTCCAGCACCTCCTCCGTCGCACACCAGCTCATGGCACTGGAGCGCAAGGGATTCCTGCGCCG
TGACCCGCACCGCCCGCGTGCCTACGAGGTCCGGGGCTCCGACCAGGGCGCCACCGTGCAGCCCACCGACACCGCCGGCA
AGCCGGCCGCGTCGTACGTCCCGCTGGTCGGCCGTATCGCCGCCGGTGGCCCCATCCTCGCCGAGGAGTCGGTCGAGGAC
GTCTTCCCTCTCCCCCGCCAGCTGGTCGGCGACGGCGAGCTGTTCGTCCTCAAGGTCGTCGGTGACTCGATGATCGAGGC
GGCGATCTGCGACGGCGACTGGGTCACCGTCCGCCGTCAGCCCGTCGCGGAGAACGGCGACATCGTCGCCGCGATGCTCG
ACGGAGAGGCCACCGTGAAGCGCTTCAAGCGCGAGGACGGCCACGTGTGGCTGCTGCCGCACAACGCCGCCTACGAGCCG
ATCCCCGGCGACGACGCGACCATCCTCGGCAAGGTGGTGGCCGTGCTGCGGCGCGTCTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(141-253)

LexA DNA binding domain (LexA_DNA_bind)

(51-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.972

81.467

0.375