Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   AS200_RS09565 Genome accession   NZ_CP013743
Coordinates   2174603..2175043 (+) Length   146 a.a.
NCBI ID   WP_343233981.1    Uniprot ID   -
Organism   Streptomyces sp. CdTB01     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2169603..2180043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AS200_RS09550 (AS200_09550) efeB 2170369..2171592 (+) 1224 WP_058921938.1 iron uptake transporter deferrochelatase/peroxidase subunit -
  AS200_RS09555 (AS200_09555) - 2171778..2173676 (+) 1899 WP_058921939.1 alkaline phosphatase family protein -
  AS200_RS09560 (AS200_09560) - 2173753..2174430 (-) 678 WP_058921940.1 DUF2202 domain-containing protein -
  AS200_RS09565 (AS200_09565) scnR 2174603..2175043 (+) 441 WP_343233981.1 response regulator Regulator
  AS200_RS50585 - 2175040..2175195 (+) 156 WP_343233982.1 winged helix-turn-helix domain-containing protein -
  AS200_RS09570 (AS200_09570) - 2175185..2176642 (+) 1458 WP_058921941.1 HAMP domain-containing sensor histidine kinase -
  AS200_RS09575 (AS200_09575) - 2176735..2177061 (+) 327 WP_058921942.1 rhodanese-like domain-containing protein -
  AS200_RS09580 (AS200_09580) - 2177108..2178337 (+) 1230 WP_058921943.1 FAD/NAD(P)-binding oxidoreductase -
  AS200_RS09585 (AS200_09585) - 2178461..2179846 (+) 1386 WP_058921944.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 15863.02 Da        Isoelectric Point: 5.0501

>NTDB_id=142382 AS200_RS09565 WP_343233981.1 2174603..2175043(+) (scnR) [Streptomyces sp. CdTB01]
MAATVLVVEDEKEIRELLRRYLERAGYAVVTTASGAEAVRLLGERAVDLTLLDLGLPDVDGDEVLREARERGAVPVVVLT
ARSTVEDRIHGLRLGADDYVAKPFSPTEVVLRVGAVLQRARGTAADAAQVSSYGGGRLRIDETRHW

Nucleotide


Download         Length: 441 bp        

>NTDB_id=142382 AS200_RS09565 WP_343233981.1 2174603..2175043(+) (scnR) [Streptomyces sp. CdTB01]
ATGGCCGCCACCGTGCTCGTCGTCGAGGACGAGAAGGAGATCCGCGAACTGCTGCGCCGCTACCTGGAACGGGCGGGCTA
CGCGGTGGTGACGACCGCATCGGGCGCGGAGGCGGTACGACTGCTGGGCGAGCGGGCGGTCGACCTGACACTGCTCGATC
TGGGGCTGCCGGACGTCGACGGTGACGAGGTGCTGCGCGAGGCCCGCGAGCGGGGCGCGGTACCGGTGGTGGTGCTCACA
GCCCGCAGCACCGTCGAGGACCGCATCCACGGGCTGCGGCTGGGCGCCGACGACTATGTGGCCAAACCGTTCAGCCCCAC
CGAGGTGGTTCTCAGGGTGGGCGCGGTCCTGCAGCGCGCCCGGGGTACGGCAGCGGATGCGGCGCAGGTCTCGTCGTACG
GCGGGGGACGGCTGCGCATCGACGAGACCCGGCATTGGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

42.742

84.932

0.363