Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsT   Type   Machinery gene
Locus tag   ATE51_RS03615 Genome accession   NZ_CP013733
Coordinates   721836..722141 (-) Length   101 a.a.
NCBI ID   WP_002790525.1    Uniprot ID   -
Organism   Campylobacter coli strain OR12     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 716836..727141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATE51_RS03580 (ATE51_01436) - 717251..718012 (+) 762 WP_025431509.1 ATP-binding protein -
  ATE51_RS03585 (ATE51_01438) - 718009..718692 (+) 684 WP_002791740.1 3-methyladenine DNA glycosylase -
  ATE51_RS03590 (ATE51_01440) thiD 718692..719504 (+) 813 WP_002797568.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ATE51_RS03595 (ATE51_01442) thiE 719494..720126 (+) 633 WP_002834515.1 thiamine phosphate synthase -
  ATE51_RS03600 (ATE51_01444) - 720104..720733 (+) 630 WP_002783358.1 uroporphyrinogen-III synthase -
  ATE51_RS03605 (ATE51_01446) - 720726..721178 (-) 453 WP_002777117.1 hypothetical protein -
  ATE51_RS03610 (ATE51_01448) - 721175..721843 (-) 669 WP_002790524.1 hypothetical protein -
  ATE51_RS03615 (ATE51_01450) ctsT 721836..722141 (-) 306 WP_002790525.1 hypothetical protein Machinery gene
  ATE51_RS03620 (ATE51_01452) proC 722138..722875 (-) 738 WP_002780246.1 pyrroline-5-carboxylate reductase Machinery gene
  ATE51_RS03625 (ATE51_01454) fliW 722875..723264 (-) 390 WP_002777093.1 flagellar assembly protein FliW -
  ATE51_RS03630 (ATE51_01456) - 723428..724075 (+) 648 WP_002780248.1 outer membrane protein assembly factor BamD -
  ATE51_RS03635 (ATE51_01458) lon 724091..726466 (+) 2376 WP_002777089.1 endopeptidase La -
  ATE51_RS03640 (ATE51_01460) rpsR 726523..726783 (-) 261 WP_002777087.1 30S ribosomal protein S18 -

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 12410.27 Da        Isoelectric Point: 6.0617

>NTDB_id=142279 ATE51_RS03615 WP_002790525.1 721836..722141(-) (ctsT) [Campylobacter coli strain OR12]
MKVAFSLLELILCIIILGLIFTSISKLFYQLNDNHDYLNYFERLYTLQDKLYTDPHQRDIKLHIQNLKTFDFKENFINDN
IFQFKKLHIQNQDYSLYFYDE

Nucleotide


Download         Length: 306 bp        

>NTDB_id=142279 ATE51_RS03615 WP_002790525.1 721836..722141(-) (ctsT) [Campylobacter coli strain OR12]
ATGAAAGTTGCATTCTCGCTTTTAGAATTAATTCTTTGTATAATTATCCTAGGATTAATTTTTACAAGTATTTCTAAATT
ATTTTATCAGCTAAATGACAATCATGATTATTTAAATTATTTTGAAAGATTATACACACTGCAAGATAAACTTTATACCG
ATCCTCATCAAAGAGATATAAAACTTCATATACAGAATTTAAAAACTTTTGATTTTAAAGAAAACTTTATAAATGATAAT
ATCTTTCAATTTAAAAAATTACATATTCAAAATCAAGATTACTCCCTATATTTTTACGATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsT Campylobacter jejuni subsp. jejuni 81-176

48.98

97.03

0.475